Structure of PDB 9j8e Chain A Binding Site BS01

Receptor Information
>9j8e Chain A (length=294) Species: 71421 (Haemophilus influenzae Rd KW20) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MMNFTLLTYLADCQPKVRSELSKNLEEDIQQLREIGLDILVDGQDYRLVP
MLPLLNPQQISTALFPYSIHYQPIISSTNEWILQNILSLKKGDLCVAEYQ
TAGRGRRGRQWLSPFAGQIMFSFYWAFDPKKSIEGLSLVIGLAIAEVLNV
QVKWPNDILFDERKLGGILVEIANHKNGMLNLVIGIGINVSLSSQPYAEV
CEIDPDVERQTLLPKLIQHLYTRLNIFEQNGIDEEFQQAWQSYNAFSNSE
INVLTEQGVISGIEQGIDERGYLKVLCGNKIQMFNGGEVSLRKK
Ligand information
Ligand IDBT5
InChIInChI=1S/C20H28N7O9PS/c21-17-14-18(23-7-22-17)27(8-24-14)19-16(30)15(29)10(35-19)5-34-37(32,33)36-12(28)4-2-1-3-11-13-9(6-38-11)25-20(31)26-13/h7-11,13,15-16,19,29-30H,1-6H2,(H,32,33)(H2,21,22,23)(H2,25,26,31)/t9-,10+,11-,13-,15+,16+,19+/m0/s1
InChIKeyUTQCSTJVMLODHM-RHCAYAJFSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C1NC2C(SCC2N1)CCCCC(=O)OP(=O)(O)OCC5OC(n3c4ncnc(N)c4nc3)C(O)C5O
OpenEye OEToolkits 1.7.5c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)OC(=O)CCCC[C@H]4[C@@H]5[C@H](CS4)NC(=O)N5)O)O)N
CACTVS 3.385Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OC(=O)CCCC[CH]4SC[CH]5NC(=O)N[CH]45)[CH](O)[CH]3O
CACTVS 3.385Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)OC(=O)CCCC[C@@H]4SC[C@@H]5NC(=O)N[C@H]45)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.7.5c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC(=O)CCCCC4C5C(CS4)NC(=O)N5)O)O)N
FormulaC20 H28 N7 O9 P S
NameBIOTINYL-5-AMP
ChEMBL
DrugBank
ZINCZINC000008551918
PDB chain9j8e Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9j8e Structural insights into BirA from Haemophilus influenzae, a bifunctional protein as a biotin protein ligase and a transcriptional repressor.
Resolution2.65 Å
Binding residue
(original residue number in PDB)
S80 T81 N82 Q103 R107 R109 R112 W114 L115 K167 G170 I171 L172 G188 I189 G190 N192
Binding residue
(residue number reindexed from 1)
S77 T78 N79 Q100 R104 R106 R109 W111 L112 K164 G167 I168 L169 G185 I186 G187 N189
Annotation score2
External links
PDB RCSB:9j8e, PDBe:9j8e, PDBj:9j8e
PDBsum9j8e
PubMed39213703
UniProtP46363|BIRA_HAEIN Bifunctional ligase/repressor BirA (Gene Name=birA)

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