Structure of PDB 9ium Chain A Binding Site BS01

Receptor Information
>9ium Chain A (length=1334) Species: 237561 (Candida albicans SC5314) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EYHGFDAHTSENIQNLARTFTHDSFNDQLNPDSENFNAKFWVKNLRKLFE
SDPEYYKPSKLGIGYRNLRAYGVPTVTNALWKLATEGFRHFQRYFDILKS
MDAIMRPGELTVVLGRPGAGCSTLLKTIAVNTYGFHIGKESQITYDGLSP
HDIERHYRGDVIYSAETDVHFPHLSVGDTLEFAARLRTPQNRGEGIDRET
YAKHMASVYMATYGLSHTRNTNVGNDFVRGVSGGERKRVSIAEASLSGAN
IQCWDNATRGLDSATALEFIRALKTSAVILDTTPLIAIYQCSQDAYDLFD
KVVVLYEGYQIFFGKATKAKEYFEKMGWKCPQRQTTADFLTSLTNPAERE
PLPGYEDKVPRTAQEFETYWKNSPEYAELTKEIDEYFVECERSPASPYTV
SFFMQVRYGVARNFLRMKGDPSIPIFSVFGQLVMGLILSSVFYNLSQTTG
SFYYRGAAMFFAVLFNAFSSLLEIMSLFEARPIVEKHKKYALYRPSADAL
ASIISELPVKLAMSMSFNFVFYFMVNFRRNPGRFFFYWLMCIWCTFVMSH
LFRSIGAVSTSISGAMTPATVLLLAMVIYTGFVIPTPSMLGWSRWINYIN
PVGYVFESLMVNEFHGREFQCAQYVPSGPGYENISRSNQVCTAVGSVPGN
EMVSGTNYLAGAYQYYNSHKWRNLGITIGFAVFFLAIYIALTEFNKGNRE
IFFWRDLTYQVKIKKEDRVILDHVDGWVKPGQITALMGASGAGKTTLLNC
LSERVTTGIITDGERLVNGHALDSSFQRSIGYVQQQDVHLETTTVREALQ
FSAYLRQSNKISKKEKDDYVDYVIDLLEMTDYADALVGVAGEGLNVEQRK
RLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCT
IHQPSALIMAEFDRLLFLQKGGRTAYFGELGENCQTMINYFEKYGADPCP
KEANPAEWMLQVVGAAPGSHAKQDYFEVWRNSSEYQAVREEINRMEAELS
KLPRDNDPEALLKYAAPLWKQYLLVSWRTIVQDWRSPGYIYSKIFLVVSA
ALFNGFSFFKAKNNMQGLQNQMFSVFMFFIPFNTLVQQMLPYFVKQRDVY
EVREAPSRTFSWFAFIAGQITSEIPYQVAVGTIAFFCWYYPLGLYNNATP
TDSVNPRGVLMWMLVTAFYVYTATMGQLCMSFSELADNAANLATLLFTMC
LNFCGVLAGPDVLPGFWIFMYRCNPFTYLVQAMLSTGLANTFVKCAEREY
VSVKPPNGESCSTYLDPYIKFAGGYFETRNDGSCAFCQMSSTNTFLKSVN
SLYSERWRNFGIFIAFIAINIILTVIFYWLARVP
Ligand information
Ligand IDA1L26
InChIInChI=1S/C47H85O19P3/c1-3-5-7-9-11-13-15-17-19-20-22-23-25-27-29-31-33-35-40(48)61-37-39(63-41(49)36-34-32-30-28-26-24-21-18-16-14-12-10-8-6-4-2)38-62-69(59,60)66-45-42(50)43(51)46(64-67(53,54)55)47(44(45)52)65-68(56,57)58/h11,13,17,19,22-23,27,29,39,42-47,50-52H,3-10,12,14-16,18,20-21,24-26,28,30-38H2,1-2H3,(H,59,60)(H2,53,54,55)(H2,56,57,58)/b13-11+,19-17+,23-22+,29-27+/t39-,42-,43+,44-,45+,46+,47+/m1/s1
InChIKeyWSOUXFSBLZNSFX-BSWMUMJKSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCCCCCCC(=O)OC(COC(=O)CCCC=CCC=CCC=CCC=CCCCCC)COP(=O)(O)OC1C(C(C(C(C1O)OP(=O)(O)O)OP(=O)(O)O)O)O
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCC/C=C/C/C=C/C/C=C/C/C=C/CCCCC)COP(=O)(O)O[C@H]1[C@@H]([C@@H]([C@@H]([C@H]([C@@H]1O)OP(=O)(O)O)OP(=O)(O)O)O)O
CACTVS 3.385CCCCCCCCCCCCCCCCCC(=O)O[CH](COC(=O)CCCC=CCC=CCC=CCC=CCCCCC)CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O
CACTVS 3.385CCCCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCC/C=C/C/C=C/C/C=C/C/C=C/CCCCC)CO[P](O)(=O)O[C@H]1[C@H](O)[C@H](O)[C@H](O[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@@H]1O
FormulaC47 H85 O19 P3
NamePip2(20:4/18:0);
[(2R)-3-[hydroxy-[(1S,5S)-2,3,6-trihydroxy-4,5-diphosphonooxycyclohexyl]oxyphosphoryl]oxy-2-octadecanoyloxypropyl] (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate;
Phosphatidylinositol Diphosphate(20:4n6/18:0)
ChEMBL
DrugBank
ZINC
PDB chain9ium Chain A Residue 1601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9ium Cryo-EM structures of Candida albicans Cdr1 reveal azole-substrate recognition and inhibitor blocking mechanisms.
Resolution3.08 Å
Binding residue
(original residue number in PDB)
G623 R624 F626 I633 F637 H706 N758 W762
Binding residue
(residue number reindexed from 1)
G532 R533 F535 I542 F546 H615 N667 W671
Annotation score1
External links
PDB RCSB:9ium, PDBe:9ium, PDBj:9ium
PDBsum9ium
PubMed39242571
UniProtQ5ANA3|CDR1_CANAL Pleiotropic ABC efflux transporter of multiple drugs CDR1 (Gene Name=CDR1)

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