Structure of PDB 9f1l Chain A Binding Site BS01

Receptor Information
>9f1l Chain A (length=126) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVK
LNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNK
PGDDIVLMAEALEKLFLQKINELPTE
Ligand information
Ligand IDA1H83
InChIInChI=1S/C48H57N9O8/c1-31-44(32(2)65-52-31)34-12-15-38-37(29-34)50-41(17-11-33-9-13-35(14-10-33)63-27-6-20-53(3)4)56(38)26-25-54-21-23-55(24-22-54)30-43(59)49-19-28-64-40-8-5-7-36-45(40)48(62)57(47(36)61)39-16-18-42(58)51-46(39)60/h5,7-10,12-15,29,39H,6,11,16-28,30H2,1-4H3,(H,49,59)(H,51,58,60)/t39-/m1/s1
InChIKeyXOBMVWOYBYSFGT-LDLOPFEMSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7Cc1c(c(on1)C)c2ccc3c(c2)nc(n3CCN4CCN(CC4)CC(=O)NCCOc5cccc6c5C(=O)N(C6=O)C7CCC(=O)NC7=O)CCc8ccc(cc8)OCCCN(C)C
CACTVS 3.385CN(C)CCCOc1ccc(CCc2nc3cc(ccc3n2CCN4CCN(CC4)CC(=O)NCCOc5cccc6C(=O)N([C@@H]7CCC(=O)NC7=O)C(=O)c56)c8c(C)onc8C)cc1
CACTVS 3.385CN(C)CCCOc1ccc(CCc2nc3cc(ccc3n2CCN4CCN(CC4)CC(=O)NCCOc5cccc6C(=O)N([CH]7CCC(=O)NC7=O)C(=O)c56)c8c(C)onc8C)cc1
OpenEye OEToolkits 2.0.7Cc1c(c(on1)C)c2ccc3c(c2)nc(n3CCN4CCN(CC4)CC(=O)NCCOc5cccc6c5C(=O)N(C6=O)[C@@H]7CCC(=O)NC7=O)CCc8ccc(cc8)OCCCN(C)C
FormulaC48 H57 N9 O8
NameN-[2-[2-[(3R)-2,6-bis(oxidanylidene)piperidin-3-yl]-1,3-bis(oxidanylidene)isoindol-4-yl]oxyethyl]-2-[4-[2-[2-[2-[4-[3-(dimethylamino)propoxy]phenyl]ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)benzimidazol-1-yl]ethyl]piperazin-1-yl]ethanamide
ChEMBL
DrugBank
ZINC
PDB chain9f1l Chain A Residue 203 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9f1l First bromodomain of BRD4 in complex with ISOX-DUAL based degrader 35
Resolution1.30001 Å
Binding residue
(original residue number in PDB)
W81 P82 F83 Q85 L92 I146
Binding residue
(residue number reindexed from 1)
W40 P41 F42 Q44 L51 I105
Annotation score1
External links
PDB RCSB:9f1l, PDBe:9f1l, PDBj:9f1l
PDBsum9f1l
PubMed
UniProtO60885|BRD4_HUMAN Bromodomain-containing protein 4 (Gene Name=BRD4)

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