Structure of PDB 9eyv Chain A Binding Site BS01

Receptor Information
>9eyv Chain A (length=625) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RVSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFIQEPAKNR
PGPQTRSDLLLSGRDWNTLIVGKLSPWIRPDSKVEKIRRNSEAAMLQELN
FGAYLGLPAFLLPLNQEDNTNLARVLTNHIHTGHHSSMFWMRVPLVAPED
LRDDIIENAPTTHTEEYSGEEKTWMWWHNFRTLCDYSKRIAVALEIGADL
PSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQRLIFRLLKLEV
QFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSPL
QPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLM
VLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQ
VTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGV
SIPGEYTSFLAPISSSKLYNEVRACREKDRDPEAQFEMPYVVRLHNFHQL
SAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLHGFAGYFETVLYQD
ITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSKKVW
YEWAVTAPVCSAIHNPTGRSYTIGL
Ligand information
Ligand IDA1H76
InChIInChI=1S/C24H19FN4O2/c25-16-9-7-15(8-10-16)13-27-23(30)22-18-4-1-2-5-19(18)24(31)29(22)14-17-12-21-20(28-17)6-3-11-26-21/h1-12,22,28H,13-14H2,(H,27,30)/t22-/m0/s1
InChIKeyYXPLZOYUGUVWOT-QFIPXVFZSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1ccc2c(c1)C(N(C2=O)Cc3cc4c([nH]3)cccn4)C(=O)NCc5ccc(cc5)F
OpenEye OEToolkits 2.0.7c1ccc2c(c1)[C@H](N(C2=O)Cc3cc4c([nH]3)cccn4)C(=O)NCc5ccc(cc5)F
CACTVS 3.385Fc1ccc(CNC(=O)[C@H]2N(Cc3[nH]c4cccnc4c3)C(=O)c5ccccc25)cc1
CACTVS 3.385Fc1ccc(CNC(=O)[CH]2N(Cc3[nH]c4cccnc4c3)C(=O)c5ccccc25)cc1
FormulaC24 H19 F N4 O2
Name(1~{S})-~{N}-[(4-fluorophenyl)methyl]-3-oxidanylidene-2-(1~{H}-pyrrolo[3,2-b]pyridin-2-ylmethyl)-1~{H}-isoindole-1-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain9eyv Chain A Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9eyv Discovery and In Vivo Efficacy of AZ-PRMT5i-1, a Novel PRMT5 Inhibitor with High MTA Cooperativity.
Resolution2.15 Å
Binding residue
(original residue number in PDB)
Y304 L312 F327 L437 E444 V503 S578 W579 F580
Binding residue
(residue number reindexed from 1)
Y292 L300 F315 L425 E432 V491 S566 W567 F568
Annotation score1
External links
PDB RCSB:9eyv, PDBe:9eyv, PDBj:9eyv
PDBsum9eyv
PubMed39080842
UniProtO14744|ANM5_HUMAN Protein arginine N-methyltransferase 5 (Gene Name=PRMT5)

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