Structure of PDB 9euy Chain A Binding Site BS01
Receptor Information
>9euy Chain A (length=492) Species:
287
(Pseudomonas aeruginosa) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
MTSITPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLG
FVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGH
SYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDE
LRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQAR
RLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEY
LTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCS
AIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALI
PCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSE
DSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPS
GPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMEL
Ligand information
Ligand ID
LBV
InChI
InChI=1S/C33H36N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,13-15,19,35H,2,9-12H2,1,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/p+1/b20-7+,26-13-,27-14-,28-15-/t19-/m0/s1
InChIKey
DKMLMZVDTGOEGU-ISEYCTJISA-O
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.2
CC=C1C(C(=O)NC1=Cc2c(c(c([nH]2)C=C3C(=C(C(=[NH+]3)C=C4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)CCC(=O)O)C)C
OpenEye OEToolkits 1.7.2
C/C=C/1\C(C(=O)N\C1=C/c2c(c(c([nH]2)/C=C\3/C(=C(C(=[NH+]3)/C=C\4/C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)CCC(=O)O)C)C
CACTVS 3.370
CC=C1[CH](C)C(=O)NC1=Cc2[nH]c(C=C3[NH+]=C(C=C4NC(=O)C(=C4C)C=C)C(=C3CCC(O)=O)C)c(CCC(O)=O)c2C
CACTVS 3.370
C/C=C/1[C@H](C)C(=O)NC/1=C/c2[nH]c(/C=C/3[NH+]=C(/C=C/4NC(=O)C(=C/4C)C=C)C(=C/3CCC(O)=O)C)c(CCC(O)=O)c2C
Formula
C33 H37 N4 O6
Name
3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid;
2(R),3(E)- PHYTOCHROMOBILIN
ChEMBL
DrugBank
ZINC
PDB chain
9euy Chain A Residue 1000 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
9euy
Cryo-EM structures of a bathy phytochrome histidine kinase reveal a unique light-dependent activation mechanism.
Resolution
2.95 Å
Binding residue
(original residue number in PDB)
Y163 Q188 Y190 S193 D194 I195 P196 Y203 R209 V243 H247 Y250 M254 S275 L454 P456
Binding residue
(residue number reindexed from 1)
Y163 Q188 Y190 S193 D194 I195 P196 Y203 R209 V243 H247 Y250 M254 S275 L454 P456
Annotation score
4
External links
PDB
RCSB:9euy
,
PDBe:9euy
,
PDBj:9euy
PDBsum
9euy
PubMed
39216473
UniProt
Q9HWR3
|BPHY_PSEAE Bacteriophytochrome (Gene Name=bphP)
[
Back to BioLiP
]