Structure of PDB 9c81 Chain A Binding Site BS01

Receptor Information
>9c81 Chain A (length=357) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PQQINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYFTWGYADIAKKQPV
TQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGI
TLLHLATYTAGGLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSS
IGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWGYR
EGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLKPLDINEKTLQQGIQL
AQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAITPP
TPAVRASWVHKTGATGGFGSYVAFIPEKELGIVMLANKNYPNPARVDAAW
QILNALQ
Ligand information
Ligand IDA1AU0
InChIInChI=1S/C19H23NO4/c21-17(14-10-12-6-7-15(14)19(12)8-9-19)20-11-16(18(22)23)24-13-4-2-1-3-5-13/h1-5,12,14-16H,6-11H2,(H,20,21)(H,22,23)/t12-,14?,15-,16+/m0/s1
InChIKeyMJMYSNTUGIKOIH-WWTUQBGBSA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC(=O)[C@@H](CNC(=O)[C@@H]1C[C@@H]2CC[C@H]1C23CC3)Oc4ccccc4
ACDLabs 12.01O=C(O)C(Oc1ccccc1)CNC(=O)C1CC2CCC1C12CC1
OpenEye OEToolkits 2.0.7c1ccc(cc1)O[C@H](CNC(=O)[C@@H]2C[C@@H]3CC[C@H]2C34CC4)C(=O)O
CACTVS 3.385OC(=O)[CH](CNC(=O)[CH]1C[CH]2CC[CH]1C23CC3)Oc4ccccc4
OpenEye OEToolkits 2.0.7c1ccc(cc1)OC(CNC(=O)C2CC3CCC2C34CC4)C(=O)O
FormulaC19 H23 N O4
Name(2R)-2-phenoxy-3-{[(1S,2S,4S)-spiro[bicyclo[2.2.1]heptane-7,1'-cyclopropane]-2-carbonyl]amino}propanoic acid
ChEMBL
DrugBank
ZINC
PDB chain9c81 Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9c81 Improved correlations with score, hit-rate, and affinity as docking library and testing scale increase
Resolution1.7 Å
Binding residue
(original residue number in PDB)
S64 Q120 Y221 L293 A318 T319 G320
Binding residue
(residue number reindexed from 1)
S60 Q116 Y217 L289 A314 T315 G316
Annotation score1
External links
PDB RCSB:9c81, PDBe:9c81, PDBj:9c81
PDBsum9c81
PubMed
UniProtP00811|AMPC_ECOLI Beta-lactamase (Gene Name=ampC)

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