Structure of PDB 9c1r Chain A Binding Site BS01

Receptor Information
>9c1r Chain A (length=285) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MQNTVHIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGT
LLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGIC
LRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLA
SKKFVHRDLAARNCMLDEKFTVKVADFGPVKWMALESLQTQKFTTKSDVW
SFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVML
KCWHPKAEMRPSFSELVSRISAIFSTFIGEHHHHH
Ligand information
Ligand IDA1ATS
InChIInChI=1S/C30H23F3N10O2/c1-40-10-6-23(39-40)17-12-19(13-17)42(28-25-5-8-36-41(25)11-9-34-28)26-15-21(32)24(14-22(26)33)38-29(44)20-4-7-37-43(30(20)45)27-3-2-18(31)16-35-27/h2-11,14-17,19H,12-13H2,1H3,(H,38,44)/t17-,19?
InChIKeyJZBISQRYUUZSEV-VYOWRKJJSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7Cn1ccc(n1)C2CC(C2)N(c3cc(c(cc3F)NC(=O)C4=CC=NN(C4=O)c5ccc(cn5)F)F)c6c7ccnn7ccn6
CACTVS 3.385Cn1ccc(n1)[CH]2C[CH](C2)N(c3cc(F)c(NC(=O)C4=CC=NN(C4=O)c5ccc(F)cn5)cc3F)c6nccn7nccc67
ACDLabs 12.01Cn1ccc(n1)C1CC(C1)N(c1nccn2nccc21)c1cc(F)c(cc1F)NC(=O)C1=CC=NN(c2ncc(F)cc2)C1=O
CACTVS 3.385Cn1ccc(n1)[C@@H]2C[C@H](C2)N(c3cc(F)c(NC(=O)C4=CC=NN(C4=O)c5ccc(F)cn5)cc3F)c6nccn7nccc67
FormulaC30 H23 F3 N10 O2
NameN-(2,5-difluoro-4-{[(1s,3S)-3-(1-methyl-1H-pyrazol-3-yl)cyclobutyl][(8R)-pyrazolo[1,5-a]pyrazin-4-yl]amino}phenyl)-2-(5-fluoropyridin-2-yl)-3-oxo-2,3-dihydropyridazine-4-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain9c1r Chain A Residue 1402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9c1r Discovery of Pyrazolopyrazines as Selective, Potent, and Mutant-Active MET Inhibitors with Intracranial Efficacy.
Resolution1.59 Å
Binding residue
(original residue number in PDB)
I1084 G1085 V1092 A1108 K1110 E1127 M1131 F1134 M1160 F1200 H1202 M1211 V1220 A1221 D1222 F1223
Binding residue
(residue number reindexed from 1)
I38 G39 V46 A62 K64 E81 M85 F88 M114 F154 H156 M165 V174 A175 D176 F177
Annotation score1
External links
PDB RCSB:9c1r, PDBe:9c1r, PDBj:9c1r
PDBsum9c1r
PubMed39088797
UniProtP08581|MET_HUMAN Hepatocyte growth factor receptor (Gene Name=MET)

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