Structure of PDB 9bgr Chain A Binding Site BS01

Receptor Information
>9bgr Chain A (length=370) Species: 672 (Vibrio vulnificus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MIKLSQPQIPEFAIEKVADILRGGQLVHGDECNLFEQELAEYLGVKHALV
VSNGTAALHLALLALNIGPGDAVIVPDFTFTATANIVEMVGAKAIIVDVD
KTSYNLDPQKLQACINEWQGPETLKAIMPVLEFGNPTHLNAYRDIAKQHG
LFMIEDAACALGASEQGTMVGTAAEFGCFSFHPRATLTTGEGGAVVTNDT
ELYNKVALLRSHGMQRTGVVFKCVGLNYRLTNFQGAIGRAILPELNQWIA
KRRELANQYRELLAPLVEVGKLTLPSIVEGHSVQTYMTVLADNFERSDVI
EALRSKQVESNLGAQSMSSLGLFNHKYNTEQQYPEGTRLYTHGLALPLHE
GMNAEDVATVVSALTEVLEH
Ligand information
Ligand IDA1APE
InChIInChI=1S/C26H38N5O21P3/c1-11-21(35)15(14(6-27-11)7-48-53(39,40)41)8-46-16-9-47-25(20(29-13(3)33)19(16)28-12(2)32)51-55(44,45)52-54(42,43)49-10-17-22(36)23(37)24(50-17)31-5-4-18(34)30-26(31)38/h4-6,16-17,19-20,22-25,35-37H,7-10H2,1-3H3,(H,28,32)(H,29,33)(H,42,43)(H,44,45)(H,30,34,38)(H2,39,40,41)/t16-,17+,19-,20+,22+,23+,24+,25+/m0/s1
InChIKeyZBCWDGZSCCDTDU-LIKBFOATSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7Cc1c(c(c(cn1)COP(=O)(O)O)CO[C@H]2CO[C@@H]([C@@H]([C@H]2NC(=O)C)NC(=O)C)OP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)N4C=CC(=O)NC4=O)O)O)O
CACTVS 3.385CC(=O)N[CH]1[CH](CO[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH]1NC(C)=O)OCc4c(O)c(C)ncc4CO[P](O)(O)=O
ACDLabs 12.01O=C1C=CN(C(=O)N1)C1OC(COP(=O)(O)OP(=O)(O)OC2OCC(OCc3c(COP(=O)(O)O)cnc(C)c3O)C(NC(C)=O)C2NC(C)=O)C(O)C1O
OpenEye OEToolkits 2.0.7Cc1c(c(c(cn1)COP(=O)(O)O)COC2COC(C(C2NC(=O)C)NC(=O)C)OP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)N4C=CC(=O)NC4=O)O)O)O
CACTVS 3.385CC(=O)N[C@H]1[C@H](CO[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@@H]1NC(C)=O)OCc4c(O)c(C)ncc4CO[P](O)(O)=O
FormulaC26 H38 N5 O21 P3
Name(2R,3R,4R,5R)-3,4-diacetamido-5-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methoxy)oxan-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)
ChEMBL
DrugBank
ZINC
PDB chain9bgr Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB9bgr Biochemical Investigation of an Aminotransferase Required for the Production of 2,3,4-triacetamido-2,3,4-trideoxy-L-arabinose
Resolution1.05 Å
Binding residue
(original residue number in PDB)
K3 S5 G54 T55 F80 F133 D156 A158 C159 S180 H182 P183 R184 E311
Binding residue
(residue number reindexed from 1)
K3 S5 G54 T55 F80 F133 D156 A158 C159 S180 H182 P183 R184 E309
Annotation score1
External links