Structure of PDB 8yyq Chain A Binding Site BS01

Receptor Information
>8yyq Chain A (length=484) Species: 159449 (Embleya scabrispora) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RAARARESVDNLYWFMLAAANSAPDTPAFVTRGVRTLSYRELRTRVDDFA
AALAELGLDVDDRVVLEANVTPDAVAMLLACSLLGLPFIPVSPETPSGRL
RSILDTAEPALFAQAEDGGRADVPATVGTARFGAGGLRVERAPRARVRHR
REIVGTDTAYIIFTPKGVVMSHRSVVSLYRAILEQGLITPEDRIATTSPL
QFDFALFDIGLALGTGAALVPVPREELNWPRRFLAFLGDTGATQVHGVPS
IWRPVLRHEPELLAGLDRVRGILFTGEDFPLPELRHLQGLLPHARIVNGY
GATESMACSLTEVPRPIPSDLERLSIGFPLPGFDVSLLDEHGRPVEEIGV
AGQIHLRAPSMFSGYWDDPEATARVLVSDPLDPRSGRTVLRSGDLAYRGE
DGELYFAGRVDANRVEPGEVERRLLEFPGISAAVALNHAFVVVKARAFCA
DTLPGYMIPANIVAVDDIPLTVNGKVDRADLATR
Ligand information
Ligand IDA1L0G
InChIInChI=1S/C20H22N8O7S/c21-6-10-2-1-3-11(4-10)12(22)5-14(29)27-36(32,33)34-7-13-16(30)17(31)20(35-13)28-9-26-15-18(23)24-8-25-19(15)28/h1-4,8-9,12-13,16-17,20,30-31H,5,7,22H2,(H,27,29)(H2,23,24,25)/t12-,13+,16+,17+,20+/m0/s1
InChIKeyZPOUQXSYNILZLP-JDLZUTDUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1cc(cc(c1)[C@H](CC(=O)NS(=O)(=O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)N)C#N
CACTVS 3.385N[CH](CC(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)c4cccc(c4)C#N
CACTVS 3.385N[C@@H](CC(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)c4cccc(c4)C#N
OpenEye OEToolkits 2.0.7c1cc(cc(c1)C(CC(=O)NS(=O)(=O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)N)C#N
FormulaC20 H22 N8 O7 S
Name[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(3~{S})-3-azanyl-3-(3-cyanophenyl)propanoyl]sulfamate
ChEMBL
DrugBank
ZINC
PDB chain8yyq Chain A Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8yyq Engineering the Substrate Specificity of (S)-beta-Phenylalanine Adenylation Enzyme HitB.
Resolution1.95 Å
Binding residue
(original residue number in PDB)
F220 D221 F222 F225 T293 G294 E295 D296 G317 Y318 G319 A320 T321 M324 A325 D412 F424 K519
Binding residue
(residue number reindexed from 1)
F202 D203 F204 F207 T275 G276 E277 D278 G299 Y300 G301 A302 T303 M306 A307 D394 F406 K475
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8yyq, PDBe:8yyq, PDBj:8yyq
PDBsum8yyq
PubMed38805007
UniProtA0A0F7R6G7

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