Structure of PDB 8ypk Chain A Binding Site BS01

Receptor Information
>8ypk Chain A (length=201) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAAD
TQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIA
GWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDE
CLQFTANALALAMERDGSSGGVIRLAAIQESGVERQVLLGDQIPKFTIAT
L
Ligand information
Ligand IDA1L0C
InChIInChI=1S/C18H33BN5O5/c1-12(2)9-17(19(27,28)29-13(3)15(20)11-25)21-18(26)16-10-24(23-22-16)14-7-5-4-6-8-14/h10-15,17,27-28H,4-9,20H2,1-3H3,(H,21,26)/t13-,15-,17+/m1/s1
InChIKeyBGAPNVWHFZNTJI-UNEWFSDZSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC(C)C[CH](NC(=O)c1cn(nn1)C2CCCCC2)[B](O)(O)O[CH](C)[CH](N)C=O
CACTVS 3.385CC(C)C[C@H](NC(=O)c1cn(nn1)C2CCCCC2)[B](O)(O)O[C@H](C)[C@H](N)C=O
OpenEye OEToolkits 2.0.7B(C(CC(C)C)NC(=O)c1cn(nn1)C2CCCCC2)(O)(O)OC(C)C(C=O)N
OpenEye OEToolkits 2.0.7B([C@H](CC(C)C)NC(=O)c1cn(nn1)C2CCCCC2)(O)(O)O[C@H](C)[C@@H](C=O)N
FormulaC18 H33 B N5 O5
Name[(2~{R},3~{S})-3-azanyl-4-oxidanylidene-butan-2-yl]oxy-[(1~{R})-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]-$l^{3}-oxidanyl-oxidanyl-boron
ChEMBL
DrugBank
ZINC
PDB chain8ypk Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ypk Optimization of alpha-amido boronic acids via cryo-electron microscopy analysis: Discovery of a novel highly selective immunoproteasome subunit LMP7 ( beta 5i)/LMP2 ( beta 1i) dual inhibitor.
Resolution2.7 Å
Binding residue
(original residue number in PDB)
T2 D17 T20 T21 T22 K33 R45 S46 G47 A49 G129 S130 S169
Binding residue
(residue number reindexed from 1)
T1 D16 T19 T20 T21 K32 R44 S45 G46 A48 G128 S129 S168
Annotation score1
External links
PDB RCSB:8ypk, PDBe:8ypk, PDBj:8ypk
PDBsum8ypk
PubMed38906067
UniProtQ60692|PSB6_MOUSE Proteasome subunit beta type-6 (Gene Name=Psmb6)

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