Structure of PDB 8yie Chain A Binding Site BS01

Receptor Information
>8yie Chain A (length=522) Species: 1665 (Arthrobacter globiformis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AFSWRDAVVYQVYLRSFRDANGDGIGDLGGLSQGLDAIAALGCDAIWLNP
CYASPQRDHGYDIADYLTIDPAYGTLEEFDEVVRRAHELGLRVLMDMVAN
HCSSDHAWFQAALAAEPGSDERARFIFRDGLGPDGELPPNNWDSVFGGLA
WTRVTERDGRPGQWYLHSFDTSQPDFDWRHPAVAEHFENVLRFWFERGVD
GFRIDVAHGHFKDAALPDHPGGRGPDAGHNHGMWDQPEVHDLYRSWRALG
DAYEPEKYFVGEIWVPSPDRLADYLRPDELHNAFSFDLLVQPWNADRFRK
AIETGLAVGRGWPAWTLANHDVHRAVTRYGQDLDRGLRRARAAAALALAL
PGSMYLYQGEELGLPEVLDLPDAARQDPIWTRSNGTELGRDGCRIPLPWT
REGRTFGFSDTTWLPQPAWFGAFARATQAADPDSMLSLHRDLLATRRTHL
RGTEPIVWLSPAGAEVLAFRRGDVVVVTNFGSAPFTPPSAWGALSPLLAS
QPGSATVPPETTVWSRLHRGVA
Ligand information
Ligand IDAC1
InChIInChI=1S/C13H23NO8/c1-4-7(10(18)12(20)13(21)22-4)14-6-2-5(3-15)8(16)11(19)9(6)17/h2,4,6-21H,3H2,1H3/t4-,6+,7-,8-,9+,10+,11+,12-,13+/m1/s1
InChIKeyRBZIIHWPZWOIDU-ZCGMLSCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC1C(C(C(C(O1)O)O)O)NC2C=C(C(C(C2O)O)O)CO
CACTVS 3.341C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1N[CH]2C=C(CO)[CH](O)[CH](O)[CH]2O
OpenEye OEToolkits 1.5.0C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)N[C@H]2C=C([C@H]([C@@H]([C@H]2O)O)O)CO
ACDLabs 10.04OC2C(NC1C=C(CO)C(O)C(O)C1O)C(OC(O)C2O)C
CACTVS 3.341C[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1N[C@H]2C=C(CO)[C@@H](O)[C@H](O)[C@H]2O
FormulaC13 H23 N O8
Name4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose;
6-METHYL-5-(4,5,6-TRIHYDROXY-3-HYDROXYMETHYL-CYCLOHEX-2-ENYLAMINO)-TETRAHYDRO-PYRAN-2,3,4-TRIOL;
4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucose;
4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-D-glucose;
4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-glucose
ChEMBL
DrugBankDB02218
ZINCZINC000058638973
PDB chain8yie Chain C Residue 3 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8yie Molecular mechanism for the substrate specificity of Arthrobacter globiformis M6 alpha-glucosidase CmmB, belonging to glycoside hydrolase family 13 subfamily 30
Resolution1.7 Å
Binding residue
(original residue number in PDB)
D74 Y77 H117 V161 F185 D221 V222 H224 E278 W280 H336 D337 R428
Binding residue
(residue number reindexed from 1)
D58 Y61 H101 V145 F169 D205 V206 H208 E262 W264 H320 D321 R390
Annotation score1
Gene Ontology
Molecular Function
GO:0004556 alpha-amylase activity
Biological Process
GO:0009313 oligosaccharide catabolic process

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Molecular Function

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Biological Process
External links
PDB RCSB:8yie, PDBe:8yie, PDBj:8yie
PDBsum8yie
PubMed
UniProtD2YYD7

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