Structure of PDB 8xmd Chain A Binding Site BS01

Receptor Information
>8xmd Chain A (length=1159) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCR
TCGSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYICRYC
TLNTGYPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVLTLPPDYWS
FLPQDSNIDESCLKPTRRIITHAQVYALLLGIDQRLIKKDIPMFNSLGLT
SFPVTPNGYRRTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSEKLCGLR
FMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLIFRS
LMDGDTVLMNRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDG
DCLHGYVPQSIQAKVELDELVALDKQLINRQNGRNLLSLGQDSLTAAYLV
NVEKNCYLNRAQMQQLQMYCPFQLPPPAIIKASPSSTEPQWTGMQLFGML
FPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFIERLLKHDKGKV
LDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLREA
EQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELA
VSAFKDAYRDVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQ
NSAVSLSFGFPRELTCAAWNDPNSPLRGAKGKTTTESYVPYGVIENSFLT
GLNPLESFVHSVTSRDSSFSGNADLPGTLSRRLMFFMRDIYAAYDGTVRN
SFGNQLVQFTYETDGPVEDITGEALGSLSACALSEAAYSALDQPISLLET
SPLLNLKNVLECGSKKGQREQTMSLYLSEYLSKKKHGFEYGSLEIKNHLE
KLSFSEIVSTSMIIFSPVPLSPWVCHFHISEKVLKRKQLSAESVVSSLNE
QYKSRNRELKLDIVDLDIQNTNHCSSDDQAMKDDNVCITVTVVEASKHSV
LELDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGEL
YLKVTMYGDRGKRNCWTALLETCLPIMDMIDWGRSHPDNIRQCCSVYGID
AGRSIFVANLESAVSDTGKEILREHLLLVADSLSVTGEFVALNAKGWSKQ
RQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAWGKVPGFG
TGDQFEIII
Ligand information
Receptor-Ligand Complex Structure
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PDB8xmd Transcription of the Plant RNA polymerase IV is prone to backtracking
Resolution3.4 Å
Binding residue
(original residue number in PDB)		R133 S916
Binding residue
(residue number reindexed from 1)		R112 S814
Gene Ontology
Molecular Function
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0005515 protein binding
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0010495 siRNA-mediated long-distance post-transcriptional gene silencing
GO:0030422 siRNA processing
GO:0031047 regulatory ncRNA-mediated gene silencing
Cellular Component
GO:0000418 RNA polymerase IV complex
GO:0000428 DNA-directed RNA polymerase complex
GO:0005634 nucleus
GO:0005654 nucleoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8xmd, PDBe:8xmd, PDBj:8xmd
PDBsum8xmd
PubMed
UniProtQ9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1 (Gene Name=NRPD1)

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