Structure of PDB 8wx7 Chain A Binding Site BS01

Receptor Information
>8wx7 Chain A (length=485) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAV
THIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHQLVIELKYPLNCADPT
SERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGSNDG
KSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLK
QPLNTTRINAAEIESRVRELSKQGFWEEFETLQQQECKLLYSRKEGQRQE
NKNKNRYKNILPFDHTRVVLHDSDYINANIIMPKKSYIATQGCLQNTVND
FWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKE
SAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLE
EVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDV
PKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETL
Ligand information
Ligand IDXD8
InChIInChI=1S/C21H23ClN8S/c22-16-14(3-7-27-18(16)24)31-20-19(25)29-15(11-28-20)30-8-4-21(5-9-30)10-13-12(17(21)23)2-1-6-26-13/h1-3,6-7,11,17H,4-5,8-10,23H2,(H2,24,27)(H2,25,29)/t17-/m1/s1
InChIKeyYFKOUTGKKFPEOH-QGZVFWFLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1cc2c(nc1)CC3(C2N)CCN(CC3)c4cnc(c(n4)N)Sc5ccnc(c5Cl)N
CACTVS 3.385N[C@@H]1c2cccnc2CC13CCN(CC3)c4cnc(Sc5ccnc(N)c5Cl)c(N)n4
CACTVS 3.385N[CH]1c2cccnc2CC13CCN(CC3)c4cnc(Sc5ccnc(N)c5Cl)c(N)n4
OpenEye OEToolkits 2.0.7c1cc2c(nc1)CC3([C@@H]2N)CCN(CC3)c4cnc(c(n4)N)Sc5ccnc(c5Cl)N
FormulaC21 H23 Cl N8 S
Name(5~{S})-1'-[6-azanyl-5-(2-azanyl-3-chloranyl-pyridin-4-yl)sulfanyl-pyrazin-2-yl]spiro[5,7-dihydrocyclopenta[b]pyridine-6,4'-piperidine]-5-amine
ChEMBL
DrugBank
ZINC
PDB chain8wx7 Chain A Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8wx7 Discovery of JAB-3312, a Potent SHP2 Allosteric Inhibitor for Cancer Treatment.
Resolution2.02 Å
Binding residue
(original residue number in PDB)
T108 E110 R111 F113 H114 T219 E249 E250 T253 Q257 K492 Q495
Binding residue
(residue number reindexed from 1)
T100 E102 R103 F105 H106 T206 E227 E228 T231 Q235 K452 Q455
Annotation score1
External links
PDB RCSB:8wx7, PDBe:8wx7, PDBj:8wx7
PDBsum8wx7
PubMed39110625
UniProtQ06124|PTN11_HUMAN Tyrosine-protein phosphatase non-receptor type 11 (Gene Name=PTPN11)

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