Structure of PDB 8www Chain A Binding Site BS01

Receptor Information
>8www Chain A (length=501) Species: 67386 (Streptomyces yokosukanensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VNMLVKALEERADAVPDLTALECEGVELTFRAVHERANRLARHLVASGVG
PDRVVAVMLPRSTDLLVTLLAVLKAGGAYLALDPEHPAERVAFQVRDAAP
VVLVTSARIDADRTDLGIARVVLDDPGTAETLAALPAGHLTDAERAAPAG
PEDLAYVIYTSGSTGTPKGVEIPVRALHNLLEAMRERLSLGPGDRMLSVT
TATFDMSVPELFLPYYTGARAVIAPRATGQDPRELGDLIVRREIGTAQAT
PTHWHMLATVSPEALRGLRILIGGEALSEKLAATLLDLGAEVVQWYGPTE
TTVWSTVHPVTGPADAAVIGKPLRNTRLYVLDEDLVPVEQGTEGELFIAG
AGVARGYLNRPELTAERFLPDRFGTGDALMYRTGDVVRMRPDGDLEYVGR
ADHQVKLHGFRVELGEIEAALERSEDVDQASATVREDRPGDRRLVAYVTA
ATGRVPDVRELRNFVAQTLPLYMVPTAVVALEEFPLTPNGKLDRKALPAP
V
Ligand information
Ligand IDYG3
InChIInChI=1S/C13H19N7O7S/c1-5(14)12(23)19-28(24,25)26-2-6-8(21)9(22)13(27-6)20-4-18-7-10(15)16-3-17-11(7)20/h3-6,8-9,13,21-22H,2,14H2,1H3,(H,19,23)(H2,15,16,17)/t5-,6-,8-,9-,13-/m1/s1
InChIKeyCWWYMWDIYBJVLP-ZOBJURTISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C[C@H](C(=O)NS(=O)(=O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N
CACTVS 3.385C[CH](N)C(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
CACTVS 3.385C[C@@H](N)C(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
OpenEye OEToolkits 2.0.7CC(C(=O)NS(=O)(=O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N
FormulaC13 H19 N7 O7 S
Name[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl N-[(2R)-2-azanylpropanoyl]sulfamate;
5'-O-(N-(D-ALANYL)-SULFAMOYL)ADENOSINE
ChEMBL
DrugBank
ZINC
PDB chain8www Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8www Functional Application of the Single-Module NRPS-like d-Alanyltransferase in Maytansinol Biosynthesis
Resolution2.78 Å
Binding residue
(original residue number in PDB)
T167 G281 E282 A283 W302 Y303 P305 T306 D392 Y404
Binding residue
(residue number reindexed from 1)
T160 G274 E275 A276 W295 Y296 P298 T299 D385 Y397
Annotation score1
External links