Structure of PDB 8vsh Chain A Binding Site BS01

Receptor Information
>8vsh Chain A (length=116) Species: 314608 (Shewanella benthica KT99) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SLYERLGGEQKIARIAADIFDTHATNPTVASRYKDSDRERVIKMVTEFLS
AGTGGPQDYTGKSMPEAHRSMNINEAEYLAVIDDIMVALDKNEVGDQEKQ
ELLMIAYSLKGEIIGA
Ligand information
Ligand IDA1ADT
InChIInChI=1S/C34H33N4O5.Fe/c1-7-20-17(3)23-13-24-19(5)22(9-10-31(39)40)28(37-24)16-30-34(12-11-32(41)43-34)33(6,42)29(38-30)15-27-21(8-2)18(4)25(36-27)14-26(20)35-23;/h7-8,13-16,42H,1-2,9-12H2,3-6H3,(H2-,35,36,37,38,39,40);/q-1;+4/p-1/t33-,34-;/m1./s1
InChIKeyCYBWRCIPTVPWKW-YDXXJHAFSA-M
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7Cc1c2cc3[n+]4c(cc5c(c(c6n5[Fe]47n2c(c1CCC(=O)O)cc8[n+]7c(c6)C(C89CCC(=O)O9)(C)O)C=C)C)C(=C3C)C=C
CACTVS 3.385CC1=C(CCC(O)=O)C2=CC3=[N+]4C(=Cc5n6c(C=C7C(=C(C)C8=[N+]7[Fe]46[N]2C1=C8)C=C)c(C)c5C=C)[C](C)(O)[C]39CCC(=O)O9
ACDLabs 12.01O=C(O)CCC1=C(C)C2=CC3=[N+]4C(=Cc5n6c(C=C7[N+]8=C(C=C1N2[Fe]648)C1(CCC(=O)O1)C7(C)O)c(C=C)c5C)C(C=C)=C3C
OpenEye OEToolkits 2.0.7Cc1c2cc3[n+]4c(cc5c(c(c6n5[Fe]47n2c(c1CCC(=O)O)cc8[n+]7c(c6)[C@@]([C@@]89CCC(=O)O9)(C)O)C=C)C)C(=C3C)C=C
CACTVS 3.385CC1=C(CCC(O)=O)C2=CC3=[N@@+]4C(=Cc5n6c(C=C7C(=C(C)C8=[N@+]7[Fe@@]46[N@]2C1=C8)C=C)c(C)c5C=C)[C@@](C)(O)[C@@]39CCC(=O)O9
FormulaC34 H32 Fe N4 O5
Name{3-[(2R,5'R)-9',14'-diethenyl-5'-hydroxy-5',10',15',19'-tetramethyl-5-oxo-4,5-dihydro-3H-spiro[furan-2,4'-[21,22,23,24]tetraazapentacyclo[16.2.1.13,6.18,11.113,16]tetracosa[1,3(24),6,8,10,12,14,16(22),17,19]decaen]-20'-yl-kappa~4~N~21'~,N~22'~,N~23'~,N~24'~]propanoato}iron
ChEMBL
DrugBank
ZINC
PDB chain8vsh Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8vsh Heme D formation in a Shewanella benthica truncated hemoglobin
Resolution2.0 Å
Binding residue
(original residue number in PDB)
Y34 R41 M45 F49 Y60 G62 K63 M65 A68 H69 M72 I74 Y79 V82 I114
Binding residue
(residue number reindexed from 1)
Y33 R40 M44 F48 Y59 G61 K62 M64 A67 H68 M71 I73 Y78 V81 I113
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0019825 oxygen binding
GO:0020037 heme binding
GO:0046872 metal ion binding
Biological Process
GO:0015671 oxygen transport

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Molecular Function

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Biological Process
External links
PDB RCSB:8vsh, PDBe:8vsh, PDBj:8vsh
PDBsum8vsh
PubMed38959524
UniProtA9DF82

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