Structure of PDB 8vn9 Chain A Binding Site BS01

Receptor Information

>8vn9 Chain A (length=162) Species: 5791 (Physarum polycephalum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

ALTNAQILAVIDSWEETVGQFPVITHHVPLGGGLQGTLHCYEIPLAAPYG
VGFAKNGPTRWQYKRTINQVVHRWGSHTVPFLLEPDNINGKTCTASHLCH
NTRCHNPLHLCWESLDDNKGRNWCPGPNGGCVHAVVCLRQGPLYGPGATV
AGPQQRGSHFVV

Ligand information

>8vn9 Chain C (length=21) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

ttgactctcttaagagagtca

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8vn9 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
Resolution	1.69 Å
Binding residue (original residue number in PDB)	A48 P49 G53 A55 K56 N57 K65 T67
Binding residue (residue number reindexed from 1)	A47 P48 G52 A54 K55 N56 K64 T66

Gene Ontology

	Molecular Function
GO:0004519	endonuclease activity

	Biological Process
GO:0006314	intron homing

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Molecular Function

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Biological Process

External links

PDB	RCSB:8vn9, PDBe:8vn9, PDBj:8vn9
PDBsum	8vn9
PubMed
UniProt	Q94702\|PPO1_PHYPO Intron-encoded endonuclease I-PpoI

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