Structure of PDB 8vc8 Chain A Binding Site BS01
Receptor Information
>8vc8 Chain A (length=197) Species:
32630
(synthetic construct) [
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GSIEELAKIAKKIAEELYPEILKEVGDEEFAEKLSRGLAIAGVALAVAGV
PLEEIVKASPEQVKELEPLFEKAGRIEAQIAQVLTGEPEEDLEKAAKAVA
AGAYFGALVIAGVPFEEAAKEVAKFLEGLTPEEIARFAQRCPALVKAAPE
ILKRDSITPEEFAKLLIEHKEELLELGRLGLPYLLKAYKMAKELLGS
Ligand information
Ligand ID
HEM
InChI
InChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;
InChIKey
KABFMIBPWCXCRK-RGGAHWMASA-L
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.6
Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=C)C(=C(C7=C2)C)C=C)C)CCC(=O)O
CACTVS 3.385
CC1=C(CCC(O)=O)C2=Cc3n4[Fe]5|6|N2=C1C=c7n5c(=CC8=N|6C(=Cc4c(C)c3CCC(O)=O)C(=C8C=C)C)c(C)c7C=C
ACDLabs 12.01
C=1c3c(c(c4C=C5C(=C(C=6C=C7C(=C(C8=CC=2C(=C(C=1N=2[Fe](n34)(N5=6)N78)CCC(=O)O)C)\C=C)C)\C=C)C)C)CCC(=O)O
Formula
C34 H32 Fe N4 O4
Name
PROTOPORPHYRIN IX CONTAINING FE;
HEME
ChEMBL
DrugBank
DB18267
ZINC
PDB chain
8vc8 Chain A Residue 302 [
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Receptor-Ligand Complex Structure
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PDB
8vc8
Generalized biomolecular modeling and design with RoseTTAFold All-Atom.
Resolution
1.8 Å
Binding residue
(original residue number in PDB)
K33 R36 A98 V99 G102 C141 P142 A143
Binding residue
(residue number reindexed from 1)
K33 R36 A98 V99 G102 C141 P142 A143
Annotation score
4
External links
PDB
RCSB:8vc8
,
PDBe:8vc8
,
PDBj:8vc8
PDBsum
8vc8
PubMed
38452047
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