Structure of PDB 8vb1 Chain A Binding Site BS01

Receptor Information
>8vb1 Chain A (length=99) Species: 587210 (HIV-1 06TG.HT043) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGI
GGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF
Ligand information
Ligand IDA1AAD
InChIInChI=1S/C35H34ClF7N10O3/c1-32(2,35(41,42)43)16-34(20-6-3-18(4-7-20)24-14-46-53(50-24)21-8-9-21)28(54)51(30(44)48-34)25(15-56-31(55)49-33(11-12-33)27(37)38)19-5-10-23(36)22(13-19)26-45-17-47-52(26)29(39)40/h3-7,10,13-14,17,21,25,27,29H,8-9,11-12,15-16H2,1-2H3,(H2,44,48)(H,49,55)/t25-,34-/m1/s1
InChIKeyPZNXPIKYOCIJGV-QCBOHVIISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC(C)(CC1(C(=O)N(C(=N)N1)C(COC(=O)NC2(CC2)C(F)F)c3ccc(c(c3)c4ncnn4C(F)F)Cl)c5ccc(cc5)c6cnn(n6)C7CC7)C(F)(F)F
CACTVS 3.385CC(C)(C[C@@]1(NC(=N)N([C@H](COC(=O)NC2(CC2)C(F)F)c3ccc(Cl)c(c3)c4ncnn4C(F)F)C1=O)c5ccc(cc5)c6cnn(n6)C7CC7)C(F)(F)F
OpenEye OEToolkits 2.0.7[H]/N=C\1/N[C@](C(=O)N1[C@H](COC(=O)NC2(CC2)C(F)F)c3ccc(c(c3)c4ncnn4C(F)F)Cl)(CC(C)(C)C(F)(F)F)c5ccc(cc5)c6cnn(n6)C7CC7
CACTVS 3.385CC(C)(C[C]1(NC(=N)N([CH](COC(=O)NC2(CC2)C(F)F)c3ccc(Cl)c(c3)c4ncnn4C(F)F)C1=O)c5ccc(cc5)c6cnn(n6)C7CC7)C(F)(F)F
ACDLabs 12.01FC(F)n1ncnc1c1cc(ccc1Cl)C(COC(=O)NC1(CC1)C(F)F)N1C(=O)C(CC(C)(C)C(F)(F)F)(NC1=N)c1ccc(cc1)c1cnn(n1)C1CC1
FormulaC35 H34 Cl F7 N10 O3
Name(2S)-2-{(3M)-4-chloro-3-[1-(difluoromethyl)-1H-1,2,4-triazol-5-yl]phenyl}-2-[(2E,4R)-4-[4-(2-cyclopropyl-2H-1,2,3-triazol-4-yl)phenyl]-2-imino-5-oxo-4-(3,3,3-trifluoro-2,2-dimethylpropyl)imidazolidin-1-yl]ethyl [1-(difluoromethyl)cyclopropyl]carbamate
ChEMBL
DrugBank
ZINC
PDB chain8vb1 Chain A Residue 101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8vb1 Preclinical characterization of a non-peptidomimetic HIV protease inhibitor with improved metabolic stability.
Resolution1.3 Å
Binding residue
(original residue number in PDB)
R8 D25 G27 G48 I50 V82 I84
Binding residue
(residue number reindexed from 1)
R8 D25 G27 G48 I50 V82 I84
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:8vb1, PDBe:8vb1, PDBj:8vb1
PDBsum8vb1
PubMed38380945
UniProtG0X8E8

[Back to BioLiP]