Structure of PDB 8v6m Chain A Binding Site BS01

Receptor Information
>8v6m Chain A (length=640) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RRLKKRIFAAVSEGCVEELVELLVELQELCRRRHDEDVPDFLMHKLTASD
TGKTCLMKALLNINPNTKEIVRILLAFAEENDILGRFINAEYTEEAYEGQ
TALNIAIERRQGDIAALLIAAGADVNAHAKGAFFNPKYQHEGFYFGETPL
ALAACTNQPEIVQLLMEHEQTDITSRDSRGNNILHALVTVAEDFKTQNDF
VKRMYDMILLRSGNWELETTRNNDGLTPLQLAAKMGKAEILKYILSREIK
EKRLRSLSRKFTDWAYGPVSSSLYDLTNVDTTTDNSVLEITVYNTNIDNR
HEMLTLEPLHTLLHMKWKKFAKHMFFLSFCFYFFYNITLTLVSYYRPREE
EAIPHPLALTHKMGWLQLLGRMFVLIWAMCISVKEGIAIFLLRPSDLQSI
LSDAWFHFVFFIQAVLVILSVFLYLFAYKEYLACLVLAMALGWANMLYYT
RGFQSMGMYSVMIQKVILHDVLKFLFVYIVFLLGFGVALASLIEKCPKDN
KDCSSYGSFSDAVLELFKLTIGLGDLNIQQNSKYPILFLFLLITYVILTF
VLLLNMLIALMGETVENVSKESERIWRLQRARTILEFEKMLPEWLRSRFR
MGELCKVAEDDFRLCLRINEVKWTEWKTHVSFLNEDPGPV
Ligand information
Ligand IDI8E
InChIInChI=1S/C19H26O2/c1-5-6-13-10-16(20)18-14-9-12(2)7-8-15(14)19(3,4)21-17(18)11-13/h9-11,14-15,20H,5-8H2,1-4H3/t14-,15-/m1/s1
InChIKeyZROLHBHDLIHEMS-HUUCEWRRSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCCc1cc(c2c(c1)OC(C3C2C=C(CC3)C)(C)C)O
OpenEye OEToolkits 2.0.7CCCc1cc(c2c(c1)OC([C@H]3[C@H]2C=C(CC3)C)(C)C)O
ACDLabs 12.01CCCc1cc2OC(C)(C)C3CCC(C)=CC3c2c(O)c1
CACTVS 3.385CCCc1cc(O)c2[C@@H]3C=C(C)CC[C@H]3C(C)(C)Oc2c1
CACTVS 3.385CCCc1cc(O)c2[CH]3C=C(C)CC[CH]3C(C)(C)Oc2c1
FormulaC19 H26 O2
NameTetrahydrocannabivarin;
(6aR,10aR)-6,6,9-trimethyl-3-propyl-6a,7,8,10a-tetrahydro-6H-dibenzo[b,d]pyran-1-ol;
THCV;
THV;
O-4394;
GWP42004
ChEMBLCHEMBL2387541
DrugBankDB11755
ZINCZINC000005649505
PDB chain8v6m Chain A Residue 903 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8v6m TRPV3 activation by different agonists accompanied by lipid dissociation from the vanilloid site
Resolution3.63 Å
Binding residue
(original residue number in PDB)		A556 A560 N561
Binding residue
(residue number reindexed from 1)		A440 A444 N445
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
GO:0005261 monoatomic cation channel activity
GO:0005262 calcium channel activity
GO:0005515 protein binding
Biological Process
GO:0006811 monoatomic ion transport
GO:0009266 response to temperature stimulus
GO:0042636 negative regulation of hair cycle
GO:0055085 transmembrane transport
GO:0070588 calcium ion transmembrane transport
GO:0090280 positive regulation of calcium ion import
Cellular Component
GO:0005737 cytoplasm
GO:0005764 lysosome
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0043235 receptor complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8v6m, PDBe:8v6m, PDBj:8v6m
PDBsum8v6m
PubMed38691614
UniProtQ8NET8|TRPV3_HUMAN Transient receptor potential cation channel subfamily V member 3 (Gene Name=TRPV3)

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