Structure of PDB 8v4h Chain A Binding Site BS01

Receptor Information
>8v4h Chain A (length=334) Species: 197 (Campylobacter jejuni) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNEILKKRLKLLKNNFGTHINKIANKKILITGANGYIGSILTLILHGNAK
LYCLVRNKDKMIDRFQEICGDIDKIDIYEDLYKIQDKIDIVIHCAAPTQS
DFFIENPIDTVDIIYTNTKNILDFSKKNNVEKIIFLSTMEIYGDVIGDNI
VEDDIGKFSVTNIRNSYPLAKQISEFMVHSYSKKYSLSTAIVRLTQAIGP
TAQINDNRVYMDFIRSAIKKSQITLFTKGETKREYIDVFDVATAIIFVMC
EKKMFEIYNISNPNIFISIYDLAKTISAKLNVQVVFDLQRDTSQYLPSFS
RRLNSKKIYQLGWTPLFDLNQSLDDMIKYIKEVN
Ligand information
Ligand IDYCX
InChIInChI=1S/C15H27N3O16P2/c16-9-1-2-18(15(26)17-9)14-13(25)12(24)8(33-14)5-32-36(29,30)34-35(27,28)31-4-7(21)11(23)10(22)6(20)3-19/h1-2,6-8,10-14,19-25H,3-5H2,(H,27,28)(H,29,30)(H2,16,17,26)/t6-,7+,8+,10+,11+,12+,13+,14+/m0/s1
InChIKeyWSJYSDVJOUCAAL-WZWGQWAVSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01OCC(O)C(O)C(O)C(O)COP(=O)(O)OP(=O)(O)OCC1OC(N2C=CC(N)=NC2=O)C(O)C1O
OpenEye OEToolkits 2.0.7C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC(C(C(C(CO)O)O)O)O)O)O
OpenEye OEToolkits 2.0.7C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OC[C@H]([C@H]([C@@H]([C@H](CO)O)O)O)O)O)O
CACTVS 3.385NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH](O)[CH](O)[CH](O)[CH](O)CO)[CH](O)[CH]2O
CACTVS 3.385NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@@H](O)[C@@H](O)[C@H](O)[C@@H](O)CO)[C@@H](O)[C@H]2O
FormulaC15 H27 N3 O16 P2
Name[[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{S})-2,3,4,5,6-pentakis(oxidanyl)hexyl] hydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain8v4h Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8v4h Biosynthesis of CDP-D-Glucitol for the Capsular Polysaccharides of Campylobacter jejuni
Resolution2.2 Å
Binding residue
(original residue number in PDB)
S100 E140 R164 T195 Q196 R208 V209 F226 T227 R233 I269 Y295 L296
Binding residue
(residue number reindexed from 1)
S100 E140 R164 T195 Q196 R208 V209 F226 T227 R233 I269 Y295 L296
Annotation score2
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016491 oxidoreductase activity

View graph for
Molecular Function
External links
PDB RCSB:8v4h, PDBe:8v4h, PDBj:8v4h
PDBsum8v4h
PubMed38386885
UniProtA0A0U3AP28|CDPGS_CAMJU CDP-6-D-glucitol synthase (Gene Name=HS5.17)

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