Structure of PDB 8u9u Chain A Binding Site BS01

Receptor Information
>8u9u Chain A (length=306) Species: 2697049 (Severe acute respiratory syndrome coronavirus 2) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDML
NPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK
YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGF
NIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI
TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDIL
GPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC
SGVTFQ
Ligand information
Ligand IDW0W
InChIInChI=1S/C29H31Cl2N3O6/c1-29(2)22-14-34(24(23(22)29)26(37)33-19(15-35)13-16-11-12-32-25(16)36)27(38)28(39-20-7-3-17(30)4-8-20)40-21-9-5-18(31)6-10-21/h3-10,12,16,19,22-24,28,35H,11,13-15H2,1-2H3,(H,33,37)/t16-,19-,22-,23-,24-/m0/s1
InChIKeyOLPUPELRRWFWGR-MUTMVCIVSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC1(C2C1C(N(C2)C(=O)C(Oc3ccc(cc3)Cl)Oc4ccc(cc4)Cl)C(=O)NC(CC5CC=NC5=O)CO)C
OpenEye OEToolkits 2.0.7CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)C(Oc3ccc(cc3)Cl)Oc4ccc(cc4)Cl)C(=O)N[C@@H](C[C@@H]5CC=NC5=O)CO)C
ACDLabs 12.01CC1(C)C2C(C(=O)NC(CC3CC=NC3=O)CO)N(CC21)C(=O)C(Oc1ccc(Cl)cc1)Oc1ccc(Cl)cc1
CACTVS 3.385CC1(C)[CH]2CN([CH]([CH]12)C(=O)N[CH](CO)C[CH]3CC=NC3=O)C(=O)C(Oc4ccc(Cl)cc4)Oc5ccc(Cl)cc5
CACTVS 3.385CC1(C)[C@H]2CN([C@@H]([C@@H]12)C(=O)N[C@H](CO)C[C@@H]3CC=NC3=O)C(=O)C(Oc4ccc(Cl)cc4)Oc5ccc(Cl)cc5
FormulaC29 H31 Cl2 N3 O6
Name(1R,2S,5S)-3-[bis(4-chlorophenoxy)acetyl]-N-{(2S)-1-hydroxy-3-[(3R)-2-oxo-3,4-dihydro-2H-pyrrol-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain8u9u Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8u9u Structure of the SARS-CoV-2 main protease in complex with inhibitors
Resolution1.85 Å
Binding residue
(original residue number in PDB)
H41 M49 F140 G143 C145 H163 H164 M165 E166 P168 T190 A191 Q192
Binding residue
(residue number reindexed from 1)
H41 M49 F140 G143 C145 H163 H164 M165 E166 P168 T190 A191 Q192
Annotation score1
External links
PDB RCSB:8u9u, PDBe:8u9u, PDBj:8u9u
PDBsum8u9u
PubMed
UniProtP0DTD1|R1AB_SARS2 Replicase polyprotein 1ab (Gene Name=rep)

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