Structure of PDB 8u9n Chain A Binding Site BS01

Receptor Information
>8u9n Chain A (length=306) Species: 2697049 (Severe acute respiratory syndrome coronavirus 2) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDML
NPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK
YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGF
NIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI
TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDIL
GPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC
SGVTFQ
Ligand information
Ligand IDW0L
InChIInChI=1S/C29H33Cl2N3O4/c1-29(2)22-14-34(25(24(22)29)27(37)33-21(15-35)13-18-11-12-32-26(18)36)28(38)23(16-3-7-19(30)8-4-16)17-5-9-20(31)10-6-17/h3-10,18,21-25,35H,11-15H2,1-2H3,(H,32,36)(H,33,37)/t18-,21-,22-,24-,25-/m0/s1
InChIKeyLQZGOZHGFUYGDK-WSHBUQBJSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01CC1(C)C2C(C(=O)NC(CC3CCNC3=O)CO)N(CC21)C(=O)C(c1ccc(Cl)cc1)c1ccc(Cl)cc1
OpenEye OEToolkits 2.0.7CC1(C2C1C(N(C2)C(=O)C(c3ccc(cc3)Cl)c4ccc(cc4)Cl)C(=O)NC(CC5CCNC5=O)CO)C
OpenEye OEToolkits 2.0.7CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)C(c3ccc(cc3)Cl)c4ccc(cc4)Cl)C(=O)N[C@@H](C[C@@H]5CCNC5=O)CO)C
CACTVS 3.385CC1(C)[C@H]2CN([C@@H]([C@@H]12)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)C(=O)C(c4ccc(Cl)cc4)c5ccc(Cl)cc5
CACTVS 3.385CC1(C)[CH]2CN([CH]([CH]12)C(=O)N[CH](CO)C[CH]3CCNC3=O)C(=O)C(c4ccc(Cl)cc4)c5ccc(Cl)cc5
FormulaC29 H33 Cl2 N3 O4
Name(1R,2S,5S)-3-[bis(4-chlorophenyl)acetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain8u9n Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8u9n Structure of the SARS-CoV-2 main protease in complex with inhibitors
Resolution1.7 Å
Binding residue
(original residue number in PDB)
H41 F140 G143 C145 H163 H164 M165 E166 Q189 T190
Binding residue
(residue number reindexed from 1)
H41 F140 G143 C145 H163 H164 M165 E166 Q189 T190
Annotation score1
External links
PDB RCSB:8u9n, PDBe:8u9n, PDBj:8u9n
PDBsum8u9n
PubMed
UniProtP0DTD1|R1AB_SARS2 Replicase polyprotein 1ab (Gene Name=rep)

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