Structure of PDB 8u9f Chain A Binding Site BS01

Receptor Information
>8u9f Chain A (length=271) Species: 226186 (Bacteroides thetaiotaomicron VPI-5482) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EVVTRSATGIKNIVYIEVNDINPLNAGSYIMDDAPFFDYVILFAANIRGV
GSDATLYNNPNVQYILDHKDTLIKPLQDKGIKVLLGLLGDHTGLGFANMN
SAQTEQFATAVANAVSQYGLDGVDFDDEWAEYGRNGYPSGSTGSFSNLIT
ALHNKMPGKTITVFNYGYTSELTGVNSYIDYGIYAFFNSPSWSTGFGMPN
SKFAPYTINLNSAPSAASAQLYSGQVASKGYGAIGYYDLRANNIVSVLNG
VAKGAFKSTCTYDGNSYPKNY
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain8u9f Chain A Residue 431 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8u9f Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate
Resolution1.08 Å
Binding residue
(original residue number in PDB)		Y219 F221 F222 S224 Y241 T242
Binding residue
(residue number reindexed from 1)		Y184 F186 F187 S189 Y206 T207
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8u9f, PDBe:8u9f, PDBj:8u9f
PDBsum8u9f
PubMed38879612
UniProtQ8A889

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