Structure of PDB 8u2e Chain A Binding Site BS01

Receptor Information
>8u2e Chain A (length=270) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS
EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLRE
MRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVS
DFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMW
EIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKA
DERPTFKILLSNILDVMDEE
Ligand information
Ligand IDUP9
InChIInChI=1S/C28H38FN7O3/c1-32-8-11-34(12-9-32)27(38)17-5-6-19-22(14-17)31-24-20(26(30)37)15-21(29)25(23(19)24)35-7-3-4-18(16-35)36-13-10-33(2)28(36)39/h15,17-18,31H,3-14,16H2,1-2H3,(H2,30,37)/t17-,18-/m0/s1
InChIKeyHAKSZOOIIKBVPT-ROUUACIJSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CN1CCN(CC1)C(=O)[C@H]2CCc3c(C2)[nH]c4c(cc(F)c(N5CCC[C@H](C5)N6CCN(C)C6=O)c34)C(N)=O
OpenEye OEToolkits 2.0.7CN1CCN(CC1)C(=O)[C@H]2CCc3c([nH]c4c3c(c(cc4C(=O)N)F)N5CCC[C@H](C5)N6CCN(C6=O)C)C2
OpenEye OEToolkits 2.0.7CN1CCN(CC1)C(=O)C2CCc3c([nH]c4c3c(c(cc4C(=O)N)F)N5CCCC(C5)N6CCN(C6=O)C)C2
ACDLabs 12.01O=C(N1CCN(C)CC1)C1Cc2[NH]c3c(cc(F)c(N4CCCC(C4)N4CCN(C)C4=O)c3c2CC1)C(N)=O
CACTVS 3.385CN1CCN(CC1)C(=O)[CH]2CCc3c(C2)[nH]c4c(cc(F)c(N5CCC[CH](C5)N6CCN(C)C6=O)c34)C(N)=O
FormulaC28 H38 F N7 O3
Name(2S)-6-fluoro-5-[(3S)-3-(3-methyl-2-oxoimidazolidin-1-yl)piperidin-1-yl]-2-(4-methylpiperazine-1-carbonyl)-2,3,4,9-tetrahydro-1H-carbazole-8-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain8u2e Chain A Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8u2e Discovery and Preclinical Pharmacology of NX-2127, an Orally Bioavailable Degrader of Bruton's Tyrosine Kinase with Immunomodulatory Activity for the Treatment of Patients with B Cell Malignancies.
Resolution1.9 Å
Binding residue
(original residue number in PDB)		L408 T410 V416 A428 K430 Y476 M477 A478 G480 C481 N484 L528
Binding residue
(residue number reindexed from 1)		L20 T22 V28 A40 K42 Y88 M89 A90 G92 C93 N96 L140
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.10.2: non-specific protein-tyrosine kinase.
Gene Ontology
Molecular Function
GO:0004672 protein kinase activity
GO:0004713 protein tyrosine kinase activity
GO:0005524 ATP binding
Biological Process
GO:0006468 protein phosphorylation

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Molecular Function
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Biological Process
External links
PDB RCSB:8u2e, PDBe:8u2e, PDBj:8u2e
PDBsum8u2e
PubMed38300987
UniProtQ06187|BTK_HUMAN Tyrosine-protein kinase BTK (Gene Name=BTK)

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