Structure of PDB 8tyg Chain A Binding Site BS01

Receptor Information
>8tyg Chain A (length=405) Species: 126793 (Plasmodium vivax Sal-1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KDLLYKYKLYGDIDEYAYYFLDIDIGTPEQRISLILDTGSSSLSFPCAGC
KNCGVHMENPFNLNNSKTSSILYCENEECPFKLNCVKGKCEYMQSYCEGS
QISGFYFSDVVSVVSYNNERVTFRKLMGCHMHEESLFLYQQATGVLGMSL
SKPQGIPTFVNLLFDNAPQLKQVFTICISENGGELIAGGYDPAYIVRALR
EAEKVVWENVTRKYYYYIKVRGLDMFGTNMMSSSKGLEMLVDSGSTFTHI
PEDLYNKLNYFFDILCIQDMNNAYDVNKRLKMTNESFNNPLVQFDDFRKS
LKSIIAKENMCVKIVDGVQCWKYLEGLPDLFVTLSNNYKMKWQPHSYLYK
KESFWCKGIEKQVNNKPILGLTFFKNRQVIFDIQKNRIGFVDANCPSHPT
HTRPR
Ligand information
Ligand IDSKC
InChIInChI=1S/C24H20ClF2N5O/c1-31-22(33)19-12-32(21-17(3-2-10-29-21)14-4-6-15(25)7-5-14)13-24(19,30-23(31)28)18-11-16(26)8-9-20(18)27/h2-11,19H,12-13H2,1H3,(H2,28,30)/t19-,24+/m0/s1
InChIKeyJZQJSLYBFWXABF-YADARESESA-N
SMILES
SoftwareSMILES
CACTVS 3.385CN1C(=N)N[C]2(CN(C[CH]2C1=O)c3ncccc3c4ccc(Cl)cc4)c5cc(F)ccc5F
OpenEye OEToolkits 2.0.7CN1C(=O)C2CN(CC2(NC1=N)c3cc(ccc3F)F)c4c(cccn4)c5ccc(cc5)Cl
ACDLabs 12.01Clc1ccc(cc1)c1cccnc1N1CC2(NC(=N)N(C)C(=O)C2C1)c1cc(F)ccc1F
OpenEye OEToolkits 2.0.7[H]/N=C/1\N[C@]2(CN(C[C@H]2C(=O)N1C)c3c(cccn3)c4ccc(cc4)Cl)c5cc(ccc5F)F
CACTVS 3.385CN1C(=N)N[C@]2(CN(C[C@H]2C1=O)c3ncccc3c4ccc(Cl)cc4)c5cc(F)ccc5F
FormulaC24 H20 Cl F2 N5 O
Name(2E,4aR,7aS)-6-[3-(4-chlorophenyl)pyridin-2-yl]-7a-(2,5-difluorophenyl)-2-imino-3-methyloctahydro-4H-pyrrolo[3,4-d]pyrimidin-4-one
ChEMBL
DrugBank
ZINC
PDB chain8tyg Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8tyg Plasmodium vivax PMV-WM08 inhibitor complex
Resolution1.64 Å
Binding residue
(original residue number in PDB)
I78 D80 S83 Q137 H173 F180 Q183 D313 G315 S316
Binding residue
(residue number reindexed from 1)
I35 D37 S40 Q94 H130 F137 Q140 D242 G244 S245
Annotation score1
External links
PDB RCSB:8tyg, PDBe:8tyg, PDBj:8tyg
PDBsum8tyg
PubMed
UniProtA5K302|PLM5_PLAVS Plasmepsin V (Gene Name=PMV)

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