Structure of PDB 8tyf Chain A Binding Site BS01

Receptor Information
>8tyf Chain A (length=400) Species: 126793 (Plasmodium vivax Sal-1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KDLLYKYKLYGDIDEYAYYFLDIDIGTPEQRISLILDTGSSSLSFPCAGC
KNCGVHMENPFNLNNSKTSSILYCENEECPFKLNCVKGKCEYMQSYCEGS
QISGFYFSDVVSVVSYNNERVTFRKLMGCHMHEESLFLYQQATGVLGMSL
SKPQGIPTFVNLLFDNAPQLKQVFTICISENGGELIAGGYDPAYIVREAE
KVVWENVTRKYYYYIKVRGLDMFGTNMMSSSKGLEMLVDSGSTFTHIPED
LYNKLNYFFDILCIQDMNNAYDVNKRLKMTNESFNNPLVQFDDFRKSLKS
IIAKENMCVKIVDGVQCWKYLEGLPDLFVTLSNNYKMKWQPHSYLYKKES
FWCKGIEKQVNNKPILGLTFFKNRQVIFDIQKNRIGFVDANCPSHPTHTR
Ligand information
Ligand IDT0F
InChIInChI=1S/C24H20ClF2N5O/c1-31-22(33)18-12-32(21-16(6-4-10-29-21)15-5-2-3-7-19(15)25)13-24(18,30-23(31)28)17-11-14(26)8-9-20(17)27/h2-11,18H,12-13H2,1H3,(H2,28,30)/t18-,24+/m0/s1
InChIKeyFCCKGIKLSVNPII-MHECFPHRSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CN1C(=O)C2CN(CC2(NC1=N)c3cc(ccc3F)F)c4c(cccn4)c5ccccc5Cl
OpenEye OEToolkits 2.0.7[H]/N=C/1\N[C@]2(CN(C[C@H]2C(=O)N1C)c3c(cccn3)c4ccccc4Cl)c5cc(ccc5F)F
CACTVS 3.385CN1C(=N)N[C@]2(CN(C[C@H]2C1=O)c3ncccc3c4ccccc4Cl)c5cc(F)ccc5F
ACDLabs 12.01Clc1ccccc1c1cccnc1N1CC2(NC(=N)N(C)C(=O)C2C1)c1cc(F)ccc1F
CACTVS 3.385CN1C(=N)N[C]2(CN(C[CH]2C1=O)c3ncccc3c4ccccc4Cl)c5cc(F)ccc5F
FormulaC24 H20 Cl F2 N5 O
Name(2E,4aR,7aS)-6-[(3M)-3-(2-chlorophenyl)pyridin-2-yl]-7a-(2,5-difluorophenyl)-2-imino-3-methyloctahydro-4H-pyrrolo[3,4-d]pyrimidin-4-one
ChEMBL
DrugBank
ZINC
PDB chain8tyf Chain A Residue 503 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8tyf Plasmodium vivax PMX-XX inhibitor complex
Resolution2.59 Å
Binding residue
(original residue number in PDB)
I78 D80 S83 S87 Q137 Y139 I145 L179 F180 Q183 V188 D313 G315 S316
Binding residue
(residue number reindexed from 1)
I35 D37 S40 S44 Q94 Y96 I102 L136 F137 Q140 V145 D239 G241 S242
Annotation score1
External links
PDB RCSB:8tyf, PDBe:8tyf, PDBj:8tyf
PDBsum8tyf
PubMed
UniProtA5K302|PLM5_PLAVS Plasmepsin V (Gene Name=PMV)

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