Structure of PDB 8ty3 Chain A Binding Site BS01

Receptor Information
>8ty3 Chain A (length=306) Species: 2697049 (Severe acute respiratory syndrome coronavirus 2) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDML
NPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK
YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGF
NIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI
TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDIL
GPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC
SGVTFQ
Ligand information
Ligand IDSJF
InChIInChI=1S/C23H29Cl2N3O5/c24-18-5-4-16(9-19(18)25)33-12-20(30)28-10-14-2-1-3-17(14)21(28)23(32)27-15(11-29)8-13-6-7-26-22(13)31/h4-5,9,13-15,17,21,29H,1-3,6-8,10-12H2,(H,26,31)(H,27,32)/t13-,14-,15-,17-,21-/m0/s1
InChIKeyDSVCEMXKUZHNPU-ICWLNENESA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC[CH](C[CH]1CCNC1=O)NC(=O)[CH]2[CH]3CCC[CH]3CN2C(=O)COc4ccc(Cl)c(Cl)c4
ACDLabs 12.01O=C1NCCC1CC(CO)NC(=O)C1C2CCCC2CN1C(=O)COc1ccc(Cl)c(Cl)c1
OpenEye OEToolkits 2.0.7c1cc(c(cc1OCC(=O)N2CC3CCCC3C2C(=O)NC(CC4CCNC4=O)CO)Cl)Cl
OpenEye OEToolkits 2.0.7c1cc(c(cc1OCC(=O)N2C[C@@H]3CCC[C@@H]3[C@H]2C(=O)N[C@@H](C[C@@H]4CCNC4=O)CO)Cl)Cl
CACTVS 3.385OC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2[C@H]3CCC[C@H]3CN2C(=O)COc4ccc(Cl)c(Cl)c4
FormulaC23 H29 Cl2 N3 O5
Name(1S,3aR,6aS)-2-[(3,4-dichlorophenoxy)acetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}octahydrocyclopenta[c]pyrrole-1-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain8ty3 Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ty3 MI-31 bound to SARS-CoV-2 Mpro
Resolution1.85 Å
Binding residue
(original residue number in PDB)
H41 F140 L141 G143 C145 H163 H164 M165 E166
Binding residue
(residue number reindexed from 1)
H41 F140 L141 G143 C145 H163 H164 M165 E166
Annotation score1
External links
PDB RCSB:8ty3, PDBe:8ty3, PDBj:8ty3
PDBsum8ty3
PubMed
UniProtP0DTD1|R1AB_SARS2 Replicase polyprotein 1ab (Gene Name=rep)

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