Structure of PDB 8ttm Chain A Binding Site BS01

Receptor Information

>8ttm Chain A (length=207) Species: 1131344 (Homo sapiens x Mus musculus hybrid cell line) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN
AKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTI
SKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQ
PENNYKTTPPVLDSDGSFFLYSSLYVDKSRWQQGNVFSCSVMHEALHNHY
TQKSLSL

Ligand information

Ligand ID

FUC

InChI

InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3+,4+,5-,6+/m0/s1

InChIKey

SHZGCJCMOBCMKK-SXUWKVJYSA-N

SMILES

Software	SMILES
CACTVS 3.341	C[C@@H]1O[C@@H](O)[C@@H](O)[C@H](O)[C@@H]1O
ACDLabs 10.04	OC1C(O)C(OC(O)C1O)C
OpenEye OEToolkits 1.5.0	CC1C(C(C(C(O1)O)O)O)O
OpenEye OEToolkits 1.5.0	C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O)O)O)O
CACTVS 3.341	C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O

Formula

C6 H12 O5

Name

alpha-L-fucopyranose;
alpha-L-fucose;
6-deoxy-alpha-L-galactopyranose;
L-fucose;
fucose

PDB chain

8ttm Chain C Residue 8 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8ttm Combinatorially restricted computational design of protein-protein interfaces to produce IgG heterodimers.
Resolution	2.51 Å
Binding residue (original residue number in PDB)	Y296 N297
Binding residue (residue number reindexed from 1)	Y60 N61
Annotation score	4

External links

PDB	RCSB:8ttm, PDBe:8ttm, PDBj:8ttm
PDBsum	8ttm
PubMed	38598628
UniProt	P0DOX5\|IGG1_HUMAN Immunoglobulin gamma-1 heavy chain

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