Structure of PDB 8t4z Chain A Binding Site BS01

Receptor Information
>8t4z Chain A (length=293) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KNYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQ
GKLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCE
MYPNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGT
SATVQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPSSAHGHRQL
VCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAG
EEAGLACRVKHSSLGGQDIILYWGSLHHILDAQKMVWNHRHHH
Ligand information
Ligand IDY73
InChIInChI=1S/C42H81NO3/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-24-26-28-30-32-34-36-38-42(46)43-40(39-44)41(45)37-35-33-31-29-27-25-16-14-12-10-8-6-4-2/h17-18,35,37,40-41,44-45H,3-16,19-34,36,38-39H2,1-2H3,(H,43,46)/b18-17?,37-35+/t40-,41-/m1/s1
InChIKeyVJSBNBBOSZJDKB-MHVYWWPXSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(NC(CO)C(O)\C=C\CCCCCCCCCCCCC)CCCCCCCCCCCCC/C=C\CCCCCCCC
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCCC=CC(C(CO)NC(=O)CCCCCCCCCCCCCC=CCCCCCCCC)O
CACTVS 3.385CCCCCCCCCCCCC\C=C\[C@@H](O)[C@@H](CO)NC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCC/C=C/[C@H]([C@@H](CO)NC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)O
CACTVS 3.385CCCCCCCCCCCCCC=C[CH](O)[CH](CO)NC(=O)CCCCCCCCCCCCCC=CCCCCCCCC
FormulaC42 H81 N O3
NameN-[(2R,3R,4E)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide
ChEMBL
DrugBank
ZINC
PDB chain8t4z Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8t4z T-cell receptor and lipid complex structure
Resolution2.691 Å
Binding residue
(original residue number in PDB)
Q14 S28 V30 F70 Y73 S76 F77 D80 V118 W133 T156 V160 F171
Binding residue
(residue number reindexed from 1)
Q9 S23 V25 F65 Y68 S71 F72 D75 V112 W127 T150 V154 F165
Annotation score1
External links
PDB RCSB:8t4z, PDBe:8t4z, PDBj:8t4z
PDBsum8t4z
PubMed39141352
UniProtP11609|CD1D1_MOUSE Antigen-presenting glycoprotein CD1d1 (Gene Name=Cd1d1)

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