Structure of PDB 8szq Chain A Binding Site BS01

Receptor Information
>8szq Chain A (length=861) Species: 9685 (Felis catus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ETVEPYKVNLSQDLEHQLQNVIQELNLEIVPPPEDPFLPVVLNLGSQRQN
QIGVVPWSPPQSNWNPWTSSNIDEGPLAYATPEQISMDLKNELMYQLEQD
HDLQAILQERELLPVKKFESEILEAISQNSVIIIRGATGCGKTTQVPQFI
LDDFIQNDRAAECNIVVTQPRRISAVSVAERVAYERGEEPGKSCGYSVRF
ESVLPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLV
VLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTYPVQEYFL
EDCIQMTHFVPPPDANCNLICGDEYGPETRMSMAQLNEKETPFELIEALL
KYIETLNVPGAVLVFLPGWNLIYTMQKHLEMNPHFGSHRYQILPLHSQIP
REEQRKVFDPVPSGVTKVILSTNIAETSITINDVVYVIDSCKQKVKLFTA
HNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFERLETHMTP
EMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRELDA
LDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAVCTISAATCFPE
PFISEGKRLGYVHRNFAGNRFSDHVALLSVFQAWDDARMGGEEAEIRFCE
HKRLNMATLRMTWEAKVQLKEILINSGFPEDCLLTQVFTNTGPDNNLDVV
ISLLAFGVYPNVCYHKEKRKILTTEGRNALIHKSSVNCPFSSQDMKYPSP
FFVFGEKIRTRAISAKGMTLVTPLQLLLFASKKVQSDGQIVLVDDWIRLQ
ISHEAAACITALRAAMEALVVEVTKQPNIISQLDPVNEHMLNMIRQISRP
SAAGINLMIDY
Ligand information
Ligand IDADP
InChIInChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyXTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
FormulaC10 H15 N5 O10 P2
NameADENOSINE-5'-DIPHOSPHATE
ChEMBLCHEMBL14830
DrugBankDB16833
ZINCZINC000012360703
PDB chain8szq Chain A Residue 1301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8szq Crystal structures of DExH-box RNA helicase DHX9
Resolution2.711 Å
Binding residue
(original residue number in PDB)		T414 G415 G417 K418 T419 T420 R457 F700 T722
Binding residue
(residue number reindexed from 1)		T138 G139 G141 K142 T143 T144 R181 F408 T430
Annotation score5
Enzymatic activity
Enzyme Commision number 3.6.4.13: RNA helicase.
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003725 double-stranded RNA binding
GO:0005524 ATP binding
GO:0033679 3'-5' DNA/RNA helicase activity

View graph for
Molecular Function
External links
PDB RCSB:8szq, PDBe:8szq, PDBj:8szq
PDBsum8szq
PubMed37860960
UniProtM3WPI7

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