Structure of PDB 8s65 Chain A Binding Site BS01
Receptor Information
>8s65 Chain A (length=410) Species:
5811
(Toxoplasma gondii) [
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RVKRLVVLGSTGSIGKSTLEIAREFPDIFQIVGLAAGGSNLALLAEQVAA
FRPQYVYLGDSSKVAELQERLNDHERSAAFPRPRLLLGDEGLAELACVPN
YDILVSAIVGFKGVLPTLKALEAGKDVALANKEALVAAGPVFRCLLSTRG
LLYGDQERKCGLLLPVDSEHSAIFQALQGVPASCYPPRKLLLTASGGPFR
GRTRDELEQVTLESALKHPKWSMGAKITIDSATLMNKGLEVIEAHFAFGC
PYSSIEVLVHPQAVIHSAVELRDGATLAQLGLPDMKLPIAYALTWPHRLA
APWSAGVDLTREGNLTFEKPDLNTFGCLGLAYEAGERGGVAPACLNAANE
VAVERFRNKEIGFVDIEDTVRHVMALQERERDNFSDVSLQDVFDADHWAR
TAARAFKPRK
Ligand information
Ligand ID
NAP
InChI
InChI=1S/C21H28N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1-4,7-8,10-11,13-16,20-21,29-31H,5-6H2,(H7-,22,23,24,25,32,33,34,35,36,37,38,39)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
XJLXINKUBYWONI-NNYOXOHSSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
Formula
C21 H28 N7 O17 P3
Name
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE;
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
ChEMBL
CHEMBL295069
DrugBank
DB03461
ZINC
PDB chain
8s65 Chain A Residue 501 [
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Receptor-Ligand Complex Structure
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PDB
8s65
1-Deoxy-d-xylulose 5-phosphate reductoisomerase as target for anti Toxoplasma gondii agents: crystal structure, biochemical characterization and biological evaluation of inhibitors.
Resolution
2.56 Å
Binding residue
(original residue number in PDB)
G33 T35 G36 S37 I38 A60 G61 S63 Y81 I132 A154 E157 D229 M285 G286 I289 M347
Binding residue
(residue number reindexed from 1)
G9 T11 G12 S13 I14 A36 G37 S39 Y57 I108 A130 E133 D167 M223 G224 I227 M285
Annotation score
4
External links
PDB
RCSB:8s65
,
PDBe:8s65
,
PDBj:8s65
PDBsum
8s65
PubMed
39105673
UniProt
S8ESX0
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