Structure of PDB 8s5b Chain A Binding Site BS01

Receptor Information
>8s5b Chain A (length=377) Species: 358 (Agrobacterium tumefaciens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DAELKIFVSIWRKALDQYEAKTPGVKVVIETGGNTSEMQAQYLNTVMSAK
DSSLDVLMLDVIRPAQFATAGWTSDFSGKDLSAYLPTYAEANTVNGKIVA
LPAFADSMFLYYRKDLLDKYGIKPPTTWDELKEASKKVMEGEKNPELQGL
SFQGKAIEGAVCTFLLPYWSEGKSLVKLNFDNKAAVDSLKLWKSFVDDGI
SKKNISEVATDDTRKEFQAGKVLFAVNWSYAWTHFQGKESQVNDKVGVAR
LPAVKGGEQTTCLGGWEFGVSAYSKQQDEAKKLVEYLSSQDVSKFMAINA
ALLPTYAALYKDADVTKTIPWFADALPVVETAKARPVTPRYNEVSETIRT
TVNGVLAGVMTPEDGAKQMESRLRRVL
Ligand information
Ligand IDA1H5E
InChIInChI=1S/C14H28O8S/c1-2-3-4-5-6-7-8-21-14-13(17)12(16)11(15)10(22-14)9-23(18,19)20/h10-17H,2-9H2,1H3,(H,18,19,20)/t10-,11-,12+,13-,14+/m1/s1
InChIKeyMGTVINCFAITWEK-RGDJUOJXSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCCCCCCCOC1C(C(C(C(O1)CS(=O)(=O)O)O)O)O
OpenEye OEToolkits 2.0.7CCCCCCCCO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CS(=O)(=O)O)O)O)O
CACTVS 3.385CCCCCCCCO[C@H]1O[C@H](C[S](O)(=O)=O)[C@@H](O)[C@H](O)[C@H]1O
CACTVS 3.385CCCCCCCCO[CH]1O[CH](C[S](O)(=O)=O)[CH](O)[CH](O)[CH]1O
FormulaC14 H28 O8 S
Name[(2~{S},3~{S},4~{S},5~{R},6~{S})-6-octoxy-3,4,5-tris(oxidanyl)oxan-2-yl]methanesulfonic acid
ChEMBL
DrugBank
ZINC
PDB chain8s5b Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8s5b Capture-and-release of a sulfoquinovose-binding protein on sulfoquinovose-modified agarose.
Resolution1.8 Å
Binding residue
(original residue number in PDB)
T42 S43 D67 F111 D113 E165 G166 T220 W238 Y240 G274 G275 W276 R345
Binding residue
(residue number reindexed from 1)
T35 S36 D60 F104 D106 E158 G159 T210 W228 Y230 G264 G265 W266 R335
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:1901982 maltose binding
Biological Process
GO:0015768 maltose transport
GO:0042956 maltodextrin transmembrane transport
Cellular Component
GO:0042597 periplasmic space
GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8s5b, PDBe:8s5b, PDBj:8s5b
PDBsum8s5b
PubMed38567495
UniProtA9CEY9|SMOF_AGRFC Sulfoquinovosyl glycerol-binding protein SmoF (Gene Name=smoF)

[Back to BioLiP]