Structure of PDB 8rkt Chain A Binding Site BS01 |
| >8rkt Chain A (length=602) Species: 34078 (Scytonema hofmannii)
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SSQITIQARLISFESNRQQLWKLMADLNTPLINELLCQLGQHPDFEKWQQ
KGKLPSTVVSQLCQPLKTDPRFAGQPSRLYMSAIHIVDYIYKSWLAIQKR
LQQQLDGKTRWLEMLNSDAELVELSGDTLEAIRVKAAEILAIAMSLSKTL
FDAYQETEDIKSRSAISYLLKNGCKLTDKEEDSEKFAKRRRQVEIQIQRL
TEKLISRMPKGRDLTNAKWLETLLTATTTVAEDNAQAKRWQDILLTRSSS
LPFPLVFETNEDMVWSKNQKGRLCVHFNGLSDLIFEVYCGNRQLHWFQRF
LEDQQTKRKSKNQHSSGLFTLRNGHLVWLEGEGKGEPWNLHHLTLYCCVD
NRLWTEEGTEIVRQEKADEITKFITNMKSDTQQALIQRKQSTLTRINNSF
ERPSQPLYQGQSHILVGVSLGLEKPATVAVVDAIANKVLAYRSIKQLLGD
NYELLNRQRRQQQYLSHERHKAQKNFSPNQFGASELGQHIDRLLAKAIVA
LARTYKAGSIVLPKLGDMREVVQSEIQAIAEQKFPGYIEGQQKYAKQYRV
NVHRWSYGRLIQSIQSKAAQTGIVIEEGKQPIRGSPHDKAKELALSAYNL
RL |
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| >8rkt Chain 1 (length=246)
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agcgccgcaauucaugcugcuugcagccucugaauuuuguuaaaugaggg
uuaguuugacuguauaaauacagucuugcuuucugacccugguagcugcu
cacccugaugcugcugucaauagacaggauaggugcgcucccagcaauaa
gggcgcggauguacugcuguaguggcuacugaaucacccccgaucaaggg
ggaacccuccaaaagguggguugaaaggagaagucauuuaauaagg |
.((((<<.<.<<<<.<<<<....>>>>...>>>>.>.>>........(((
(......<<<<<<<....>>>>>>>...<<<<<<<)))).<<<<<<<<<<
..<<<<...<<<<<<<<<....>>>>>....<<.)))).>>>>>>....>
>>>.<<<.......>>>...>>>>>>>>>>....>><<<<<......>>>
>><<<<<.<......>.>>>>>>>>>>................... |
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| PDB | 8rkt Conformational landscape of the type V-K CRISPR-associated transposon integration assembly. |
| Resolution | 2.35 Å |
Binding residue
(original residue number in PDB) | Q3 I4 T5 Q7 R9 I11 S12 R17 I90 R227 K231 S234 R235 P237 K238 R240 N262 Q269 F281 P282 R300 V315 Y316 C317 G318 N319 R320 Q321 L322 H323 N367 Y374 W382 Y474 S476 K478 Q479 N489 R490 R492 R493 Q494 Y497 H500 H503 Q506 N508 F509 P511 E518 L519 H522 R525 K529 K579 R582 V583 H586 Q595 K600 Q603 H620 |
Binding residue
(residue number reindexed from 1) | Q3 I4 T5 Q7 R9 I11 S12 R17 I90 R199 K203 S206 R207 P209 K210 R212 N234 Q241 F253 P254 R272 V287 Y288 C289 G290 N291 R292 Q293 L294 H295 N339 Y346 W354 Y441 S443 K445 Q446 N456 R457 R459 R460 Q461 Y464 H467 H470 Q473 N475 F476 P478 E485 L486 H489 R492 K496 K546 R549 V550 H553 Q562 K567 Q570 H587 |
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