Structure of PDB 8qq3 Chain A Binding Site BS01

Receptor Information
>8qq3 Chain A (length=125) Species: 1895 (Streptomyces avidinii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MGRDQAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGR
YDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWL
LTSGTTEANAWKSTLVGHDTFTKVK
Ligand information
Ligand IDWKF
InChIInChI=1S/C35H39N7O3S/c43-32(39-25-11-3-7-22-9-5-19-37-29(22)25)35(33(44)40-26-12-4-8-23-10-6-20-38-30(23)26)16-14-24(15-17-35)36-18-2-1-13-28-31-27(21-46-28)41-34(45)42-31/h3-12,19-20,24,27-28,31,36H,1-2,13-18,21H2,(H,39,43)(H,40,44)(H2,41,42,45)/t27-,28-,31-/m0/s1
InChIKeyRCUCAUCKUVJHRT-QYDYLWNGSA-N
SMILES
SoftwareSMILES
CACTVS 3.385O=C1N[CH]2CS[CH](CCCCNC3CCC(CC3)(C(=O)Nc4cccc5cccnc45)C(=O)Nc6cccc7cccnc67)[CH]2N1
CACTVS 3.385O=C1N[C@H]2CS[C@@H](CCCCNC3CCC(CC3)(C(=O)Nc4cccc5cccnc45)C(=O)Nc6cccc7cccnc67)[C@H]2N1
OpenEye OEToolkits 2.0.7c1cc2cccnc2c(c1)NC(=O)C3(CCC(CC3)NCCCC[C@H]4[C@@H]5[C@H](CS4)NC(=O)N5)C(=O)Nc6cccc7c6nccc7
OpenEye OEToolkits 2.0.7c1cc2cccnc2c(c1)NC(=O)C3(CCC(CC3)NCCCCC4C5C(CS4)NC(=O)N5)C(=O)Nc6cccc7c6nccc7
FormulaC35 H39 N7 O3 S
Name4-[4-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]butylamino]-~{N}1,~{N}1'-di(quinolin-8-yl)cyclohexane-1,1-dicarboxamide
ChEMBL
DrugBank
ZINC
PDB chain8qq3 Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8qq3 An artificial nickel chlorinase based on the biotin-streptavidin technology.
Resolution1.6 Å
Binding residue
(original residue number in PDB)
N23 S27 Y43 S45 V47 N49 W79 T90 W108 S112 T114 K121 S122 L124 D128
Binding residue
(residue number reindexed from 1)
N14 S18 Y34 S36 V38 N40 W70 T81 W99 S103 T105 K112 S113 L115 D119
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0005576 extracellular region

View graph for
Molecular Function

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Cellular Component
External links
PDB RCSB:8qq3, PDBe:8qq3, PDBj:8qq3
PDBsum8qq3
PubMed38277163
UniProtP22629|SAV_STRAV Streptavidin

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