Structure of PDB 8qdi Chain A Binding Site BS01

Receptor Information
>8qdi Chain A (length=195) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SDVYEPAEDTFLLLDALEAAAAELAGVEICLEVGSGSGVVSAFLASMIGP
QALYMCTDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLL
VFNPPYVVTPPQEVGSHGIEAAWAGGRNGREVMDRFFPLVPDLLSPRGLF
YLVTIKENNPEEILKIMKTKGLQGTTALSRQAGQETLSVLKFTKS
Ligand information
Ligand IDQII
InChIInChI=1S/C20H32N8O5/c21-12(20(31)32)4-7-27(6-3-11-2-1-5-23-11)8-13-15(29)16(30)19(33-13)28-10-26-14-17(22)24-9-25-18(14)28/h9-13,15-16,19,23,29-30H,1-8,21H2,(H,31,32)(H2,22,24,25)/t11-,12+,13-,15-,16-,19-/m1/s1
InChIKeyHVEHZOYFHBQABO-DAEWCUBLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC[C@H]4CCCN4)CC[C@@H](C(=O)O)N)O)O)N
CACTVS 3.385N[C@@H](CCN(CC[C@H]1CCCN1)C[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)C(O)=O
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCC4CCCN4)CCC(C(=O)O)N)O)O)N
CACTVS 3.385N[CH](CCN(CC[CH]1CCCN1)C[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(O)=O
FormulaC20 H32 N8 O5
Name(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[2-[(2~{R})-pyrrolidin-2-yl]ethyl]amino]-2-azanyl-butanoic acid
ChEMBL
DrugBank
ZINC
PDB chain8qdi Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8qdi compound 1a bound KMT9 crystal structure
Resolution1.467 Å
Binding residue
(original residue number in PDB)
Y23 D28 T29 G53 S54 G55 D77 I78 D103 L104 N122 P123 Y125 A141
Binding residue
(residue number reindexed from 1)
Y4 D9 T10 G34 S35 G36 D58 I59 D84 L85 N103 P104 Y106 A122
Annotation score3
External links
PDB RCSB:8qdi, PDBe:8qdi, PDBj:8qdi
PDBsum8qdi
PubMed
UniProtQ9Y5N5|N6MT1_HUMAN Methyltransferase N6AMT1 (Gene Name=N6AMT1)

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