Structure of PDB 8pu4 Chain A Binding Site BS01

Receptor Information
>8pu4 Chain A (length=157) Species: 556270 (Coprobacillus sp. D7) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YILDKIGLNIEILESLSYESKLGMSFKRTLSHFNKEEVLKEIELINNWYF
SLEIIDDLPLDSRIKSVSSAKMKFERYYPNATYNRVFNDILGFRVICKSY
DEVLELEKEDKIRVVDMSGFRGIHVYYQRDNHHYPIEIQFNTYYDRQLND
WLHDKFY
Ligand information
Ligand IDDOU
InChIInChI=1S/C11H18N5O12P3/c12-9-6-10(14-2-13-9)16(3-15-6)11-8(18)7(17)5(27-11)1-26-29(19,20)4-30(21,22)28-31(23,24)25/h2-3,5,7-8,11,17-18H,1,4H2,(H,19,20)(H,21,22)(H2,12,13,14)(H2,23,24,25)
InChIKeyCAWZRIXWFRFUQB-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)O)N
CACTVS 3.385Nc1ncnc2n(cnc12)[C@@H]3O[C@@H](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)O)N
CACTVS 3.385Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
FormulaC11 H18 N5 O12 P3
Name[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid
ChEMBL
DrugBank
ZINC
PDB chain8pu4 Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8pu4 FaRel2 bound to the ATP analogue, APCPP
Resolution2.62 Å
Binding residue
(original residue number in PDB)
R64 K66 S70 K74 D90 G93 F94 R95 Q147
Binding residue
(residue number reindexed from 1)
R63 K65 S69 K73 D89 G92 F93 R94 Q139
Annotation score1
Gene Ontology
Biological Process
GO:0015970 guanosine tetraphosphate biosynthetic process

View graph for
Biological Process
External links
PDB RCSB:8pu4, PDBe:8pu4, PDBj:8pu4
PDBsum8pu4
PubMed
UniProtA0A3E3DY42

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