Structure of PDB 8por Chain A Binding Site BS01

Receptor Information
>8por Chain A (length=164) Species: 292805 (Wolbachia endosymbiont strain TRS of Brugia malayi) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EGVTIEFKIVGLNKKLKVFTTCPHTLFGASFCAVAIEHPIVQDLMSKEIQ
DLISSIKIQGKNNEKVGIYTGLNVKHPFLDKELPLYVANFVLMEYREGAI
FGCPAHDQRDFEFAQEYDLPIIPVISSANSIMFNSEFLNGLTVSEARKVI
VEKLEEKGIGKKTI
Ligand information
Ligand IDEYT
InChIInChI=1S/C24H26BBrN8O10PS/c26-11-1-2-12(39-5-3-15(35)33-24-29-4-6-46-24)17-16(11)13(7-27)42-25(17)43-19-14(8-40-45(36,37)38)41-23(20(19)44-25)34-10-32-18-21(28)30-9-31-22(18)34/h1-2,4,6,9-10,13-14,19-20,23H,3,5,7-8,27H2,(H2,28,30,31)(H,29,33,35)(H2,36,37,38)/q-1/t13-,14-,19-,20-,23-,25+/m1/s1
InChIKeyWVJYJHILOSTTGL-NCOZZQORSA-N
SMILES
SoftwareSMILES
CACTVS 3.385NC[CH]1O[B-]2(O[CH]3[CH](CO[P](O)(O)=O)O[CH]([CH]3O2)n4cnc5c(N)ncnc45)c6c(OCCC(=O)Nc7sccn7)ccc(Br)c16
OpenEye OEToolkits 2.0.6[B-]12(c3c(ccc(c3C(O1)CN)Br)OCCC(=O)Nc4nccs4)OC5C(OC(C5O2)n6cnc7c6ncnc7N)COP(=O)(O)O
OpenEye OEToolkits 2.0.6[B-]12(c3c(ccc(c3[C@H](O1)CN)Br)OCCC(=O)Nc4nccs4)O[C@@H]5[C@H](O[C@H]([C@@H]5O2)n6cnc7c6ncnc7N)COP(=O)(O)O
CACTVS 3.385NC[C@H]1O[B-]2(O[C@@H]3[C@@H](CO[P](O)(O)=O)O[C@H]([C@@H]3O2)n4cnc5c(N)ncnc45)c6c(OCCC(=O)Nc7sccn7)ccc(Br)c16
FormulaC24 H26 B Br N8 O10 P S
Name[(1~{R},5~{S},6~{R},8~{R},9'~{S})-9'-(aminomethyl)-8-(6-aminopurin-9-yl)-2'-bromanyl-5'-[3-oxidanylidene-3-(1,3-thiazol-2-ylamino)propoxy]spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,7'-8-oxa-7-boranuidabicyclo[4.3.0]nona-1(6),2,4-triene]-6-yl]methyl dihydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain8por Chain A Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8por Targeting A Microbiota Wolbachian Aminoacyl-tRNA Synthetase To Block Its Pathogenic Host
Resolution1.85 Å
Binding residue
(original residue number in PDB)
F240 T241 T242 C243 V312 L313 Y316 R317 I321 F322 C324 H327 D328 R330 D331
Binding residue
(residue number reindexed from 1)
F19 T20 T21 C22 V91 L92 Y95 R96 I100 F101 C103 H106 D107 R109 D110
Annotation score2
Enzymatic activity
Enzyme Commision number 6.1.1.4: leucine--tRNA ligase.
External links
PDB RCSB:8por, PDBe:8por, PDBj:8por
PDBsum8por
PubMed38985862
UniProtQ5GS31|SYL_WOLTR Leucine--tRNA ligase (Gene Name=leuS)

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