Structure of PDB 8pnx Chain A Binding Site BS01

Receptor Information
>8pnx Chain A (length=278) Species: 138336 (Blastococcus saxobsidens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QRSVAVWRDGAAVTVPAHQPVVTAFDLGLGRGDGIFESVAVVAGRTPHLA
AHLTRLTRSAALLGLPAPGDQAWMEMVAAVLADWPAALEGVCRLFLTRGL
GDGTPPTALALLAPVPADTLRQRAEGISVATLGLGVPADFRAGAPWLLGG
AKTLSYAVNMAAQRHAHDLGADDVVFTSLEGRLLEGPTSTVVWAAGGTLH
TPPVETGILPGTTQARLFTAAAADGWPTSVTPGTVDDLHAADAVWLLSGV
RGAAVVHTVDGVRRGDGDLSRRVRELLA
Ligand information
Ligand IDPMP
InChIInChI=1S/C8H13N2O5P/c1-5-8(11)7(2-9)6(3-10-5)4-15-16(12,13)14/h3,11H,2,4,9H2,1H3,(H2,12,13,14)
InChIKeyZMJGSOSNSPKHNH-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1CN)C
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)CN)O
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(CN)c1O
FormulaC8 H13 N2 O5 P
Name4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE;
PYRIDOXAMINE-5'-PHOSPHATE
ChEMBLCHEMBL1235353
DrugBankDB02142
ZINCZINC000001532708
PDB chain8pnx Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8pnx Structural determinants of dual substrate recognition in the transaminase from Blastococcus saxobsidens specific to D-amino acids and R-amines
Resolution1.8 Å
Binding residue
(original residue number in PDB)
R58 K155 Y159 E188 T191 S192 T193 L212 T215 T216 S251 G252
Binding residue
(residue number reindexed from 1)
R55 K152 Y156 E185 T188 S189 T190 L209 T212 T213 S248 G249
Annotation score4
Gene Ontology
Molecular Function
GO:0008483 transaminase activity
GO:0016829 lyase activity
Biological Process
GO:0019752 carboxylic acid metabolic process
GO:0046394 carboxylic acid biosynthetic process
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8pnx, PDBe:8pnx, PDBj:8pnx
PDBsum8pnx
PubMed
UniProtH6RQF3

[Back to BioLiP]