Structure of PDB 8pdq Chain A Binding Site BS01

Receptor Information
>8pdq Chain A (length=363) Species: 694067 (Human metapneumovirus CAN97-83) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MSLQGIHLSDLSYKHAILKESQYTIKRDVGTTTAVTPSSLQQEITLLCGE
ILYAKHADYKYAAEIGIQYISTALGSERVQQILRNSGSEVQVVLTRTYSL
GKIKNNKGEDLQMLDIHGVEKSWVEEIDKEARKTMATLLKESSIPQNQRP
SAPDTPIILLCVGALIFTKLASTIEVGLETTVRRANRVLSDALKRYPRMD
IPKIARSFYDLFEQKVYHRSLFIEYGKALGSSSTGSKAESLFVNIFMQAY
GAGQTMLRWGVIARSSNNIMLGHVSVQAELKQVTEVYDLVREMGPESGLL
HLRQSPKAGLLSLANCPNFASVVLGNASGLGIIGMYRGRVPNTELFSAAE
SYAKSLKESNKIN
Ligand information
>8pdq Chain B (length=7) Species: 694067 (Human metapneumovirus CAN97-83) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
DIYQLIM
Receptor-Ligand Complex Structure
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PDB8pdq Structure of the N-RNA/P interface indicates mode of L/P recruitment to the nucleocapsid of human metapneumovirus.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		I103 K104 N105 N106 R132 M135
Binding residue
(residue number reindexed from 1)		I103 K104 N105 N106 R132 M135
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

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Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:8pdq, PDBe:8pdq, PDBj:8pdq
PDBsum8pdq
PubMed37993464
UniProtQ6WBA1|NCAP_HMPVC Nucleoprotein (Gene Name=N)

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