Structure of PDB 8p7d Chain A Binding Site BS01

Receptor Information
>8p7d Chain A (length=239) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TLVSDFKQQKLEQEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSQKLT
MLEAGCGVGNCLFPLLEEDPNIFAYACDFSPRAIEYVKQNPLYDTERCKV
FQCDLTKDDLLDHVPPESVDVVMLIFVLSAVHPDKMHLVLQNIYKVLKPG
KSVLFRDYGLYDHAMLRFKASSKLGENFYVRQDGTRSYFFTDDFLAQLFM
DTGYEEVVNEYVFRETVNKKEGLCVPRVFLQSKFLKPPK
Ligand information
>8p7d Chain R (length=83) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gcagugguggccgagugguuaaggcgucggacuugaaauccgauucgcuc
ugcgagcguggguucgaaucccacccacugcgc
<<<<<<<..<<<..........>>><<<<<<.......>>>>>><<<<..
.>>>>..<<<<<.......>>>>>>>>>>>>..
Receptor-Ligand Complex Structure
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PDB8p7d Structural basis of the cooperation between the m3C-RNA-methyltransferase METTL6 with SerRS amino-acyl-synthetase for tRNA recognition
Resolution4.2 Å
Binding residue
(original residue number in PDB)		K43 D46 L47 K50 N52 N55 F56 F57 K58 D59 R60 H61 W62 R114 F158 Y190 H195 R199 R213 Q214 R246 T248 N250 K251 K252 R259 F261
Binding residue
(residue number reindexed from 1)		K17 D20 L21 K24 N26 N29 F30 F31 K32 D33 R34 H35 W36 R82 F126 Y158 H163 R167 R181 Q182 R214 T216 N218 K219 K220 R227 F229
Enzymatic activity
Enzyme Commision number 2.1.1.-
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0008168 methyltransferase activity
GO:0008173 RNA methyltransferase activity
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
GO:0019899 enzyme binding
GO:0052735 tRNA (cytidine-3-)-methyltransferase activity
Biological Process
GO:0006400 tRNA modification
GO:0008033 tRNA processing
GO:0030488 tRNA methylation
GO:0032259 methylation
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8p7d, PDBe:8p7d, PDBj:8p7d
PDBsum8p7d
PubMed38918637
UniProtQ8TCB7|METL6_HUMAN tRNA N(3)-methylcytidine methyltransferase METTL6 (Gene Name=METTL6)

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