Structure of PDB 8p3b Chain A Binding Site BS01

Receptor Information
>8p3b Chain A (length=159) Species: 604162 (Neisseria meningitidis 8013) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEY
YLNHGEWPGDNSSAGVATSADIKGKYVKEVEVKNGVITAQMASSNVNNEI
KGKKLSLWAKRQDGSVKWFCGLPVARDDTDSATDVKADTTDNINTKHLPS
TCRDDSSAS
Ligand information
Ligand IDG3P
InChIInChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)/t3-/m1/s1
InChIKeyAWUCVROLDVIAJX-GSVOUGTGSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C(COP(=O)(O)O)O)O
CACTVS 3.385OC[C@@H](O)CO[P](O)(O)=O
ACDLabs 12.01O=P(OCC(O)CO)(O)O
OpenEye OEToolkits 1.7.6C([C@H](COP(=O)(O)O)O)O
CACTVS 3.385OC[CH](O)CO[P](O)(O)=O
FormulaC3 H9 O6 P
NameSN-GLYCEROL-3-PHOSPHATE
ChEMBLCHEMBL1232920
DrugBankDB02515
ZINCZINC000003830896
PDB chain8p3b Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8p3b Cryo-EM structures of type IV pili complexed with nanobodies reveal immune escape mechanisms.
Resolution3.15 Å
Binding residue
(original residue number in PDB)		S69 E79
Binding residue
(residue number reindexed from 1)		S69 E79
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009289 pilus
GO:0016020 membrane

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8p3b, PDBe:8p3b, PDBj:8p3b
PDBsum8p3b
PubMed38499587
UniProtQ59621

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