Structure of PDB 8p2v Chain A Binding Site BS01

Receptor Information
>8p2v Chain A (length=161) Species: 604162 (Neisseria meningitidis 8013) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEY
YLNHGEWPGDNSSAGVATSADIKGKYVQSVTVANGVITAQMASSNVNNEI
KSKKLSLWAKRQNGSVKWFCGQPVTRTTATATDVAAANGKTDDKINTKHL
PSTCRDDSSAS
Ligand information
Ligand IDWKE
InChIInChI=1S/C11H20N2O7/c1-4-7(13-10(18)6(16)3-14)9(17)8(11(19)20-4)12-5(2)15/h4,6-9,11,14,16-17,19H,3H2,1-2H3,(H,12,15)(H,13,18)/t4-,6-,7-,8-,9+,11-/m1/s1
InChIKeyZAABMPWLDGVWSW-VQYCFQGSSA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[CH]1O[CH](O)[CH](NC(C)=O)[CH](O)[CH]1NC(=O)[CH](O)CO
CACTVS 3.385C[C@H]1O[C@@H](O)[C@H](NC(C)=O)[C@@H](O)[C@@H]1NC(=O)[C@H](O)CO
OpenEye OEToolkits 2.0.7CC1C(C(C(C(O1)O)NC(=O)C)O)NC(=O)C(CO)O
OpenEye OEToolkits 2.0.7C[C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)NC(=O)C)O)NC(=O)[C@@H](CO)O
FormulaC11 H20 N2 O7
Name(2~{R})-~{N}-[(2~{R},3~{S},4~{S},5~{R},6~{R})-5-acetamido-2-methyl-4,6-bis(oxidanyl)oxan-3-yl]-2,3-bis(oxidanyl)propanamide
ChEMBL
DrugBank
ZINC
PDB chain8p2v Chain A Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8p2v Cryo-EM structures of type IV pili complexed with nanobodies reveal immune escape mechanisms.
Resolution2.99 Å
Binding residue
(original residue number in PDB)
Y50 G59 S63
Binding residue
(residue number reindexed from 1)
Y50 G59 S63
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009289 pilus
GO:0016020 membrane

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Biological Process

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Cellular Component
External links
PDB RCSB:8p2v, PDBe:8p2v, PDBj:8p2v
PDBsum8p2v
PubMed38499587
UniProtA0A9K2KM41

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