Structure of PDB 8p1q Chain A Binding Site BS01

Receptor Information
>8p1q Chain A (length=439) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PNPNDWRRVDGWPVGLKNVGNTCWFSAVIQSLFQLPEFRRLVLSYSLPQN
VLENCRSHTEKRNIMFMQELQYLFALMMGSNRKFVDPSAALDLLKGAQDV
SEFTHKLLDWLEDAFQLAVNVNSENPMVQLFYGTFLTEGVREGKPFCNNE
TFGQYPLQVNGYRNLDECLEGAMVEGDVEKYGQERWFTKLPPVLTFELSR
FEKHNKLEFPQIIYMDRYMYRSKELIRNKRECIRKLKEEIKILQQKLERY
VKYGSGPARFPLPDMLKYVIEFASTGAPRTVTDEEINFVKTCLQRWRSEI
EQDIQDLKTCIASTTQTIEQMYCDPLLRQVPYRLHAVLVHEGQANAGHYW
AYIYNQPRQSWLKYNDISVTESSWEEVERDSYGGLRNVSAYCLMYINDKL
PYFQMSEVEALSVELKHYIQEDNWRFEQEVEEWEEEQSC
Ligand information
Ligand IDWFT
InChIInChI=1S/C25H29N5OS/c1-14-2-9-21-22(26)23(32-25(21)27-14)24(31)29-17-5-3-16-11-20(8-4-15(16)10-17)30-12-18-6-7-19(13-30)28-18/h2,4,8-9,11,17-19,28H,3,5-7,10,12-13,26H2,1H3,(H,29,31)/t17-,18-,19+/m0/s1
InChIKeyUZKKSCQGVUDMFY-GBESFXJTSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7Cc1ccc2c(c(sc2n1)C(=O)NC3CCc4cc(ccc4C3)N5CC6CCC(C5)N6)N
OpenEye OEToolkits 2.0.7Cc1ccc2c(c(sc2n1)C(=O)N[C@H]3CCc4cc(ccc4C3)N5C[C@H]6CC[C@@H](C5)N6)N
CACTVS 3.385Cc1ccc2c(N)c(sc2n1)C(=O)N[CH]3CCc4cc(ccc4C3)N5C[CH]6CC[CH](C5)N6
CACTVS 3.385Cc1ccc2c(N)c(sc2n1)C(=O)N[C@H]3CCc4cc(ccc4C3)N5C[C@@H]6CC[C@H](C5)N6
FormulaC25 H29 N5 O S
Name3-azanyl-N-[(2S)-6-[(1S,5R)-3,8-diazabicyclo[3.2.1]octan-3-yl]-1,2,3,4-tetrahydronaphthalen-2-yl]-6-methyl-thieno[2,3-b]pyridine-2-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain8p1q Chain A Residue 802 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8p1q USP28 in complex with FT206
Resolution2.79 Å
Binding residue
(original residue number in PDB)
T260 L264 F292 Q315 T364 E366 H592 A596 Y601 Y643 C644
Binding residue
(residue number reindexed from 1)
T104 L108 F131 Q154 T195 E197 H340 A344 Y349 Y391 C392
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.19.12: ubiquitinyl hydrolase 1.
External links
PDB RCSB:8p1q, PDBe:8p1q, PDBj:8p1q
PDBsum8p1q
PubMed
UniProtQ96RU2|UBP28_HUMAN Ubiquitin carboxyl-terminal hydrolase 28 (Gene Name=USP28)

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