Structure of PDB 8juq Chain A Binding Site BS01

Receptor Information

>8juq Chain A (length=350) Species: 669 (Vibrio harveyi) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

DGANSDAAKEYLTKDSFSYEVYGIIAMQAAYRDYDSGDAKQDDNLGGMQL
NNESRIGFRGKKQFANFEPTFIWQIEGGYVDPSFGGEGAGLGERDTFVGF
ESASWGQVRLGRVLTPMYELVDWPASNPGLGDVYDWGGAIGGAKYQDRQS
NTIRWDSPMYADKFSIDAAVGAGDKAGLGAGDDYWGGIAAHYKLGPLQLD
AAYEGNRNIEAEGQTWENNTYLVGVQGWFENGISFFAQYKYMEADASNGV
NEKQDAMSAGLMYTTGDWQYKLGYAANFDLERDGKTLSNTSDDVVSAQIM
YFVDPSAVLYARARMNDFNEGLDGLDDAARWTSGTNGDYNEYSVGVEYYF

Ligand information

Ligand ID

C8E

InChI

InChI=1S/C16H34O5/c1-2-3-4-5-6-7-9-18-11-13-20-15-16-21-14-12-19-10-8-17/h17H,2-16H2,1H3

InChIKey

FEOZZFHAVXYAMB-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04	O(CCCCCCCC)CCOCCOCCOCCO
CACTVS 3.341 OpenEye OEToolkits 1.5.0	CCCCCCCCOCCOCCOCCOCCO

Formula

C16 H34 O5

Name

(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE

PDB chain

8juq Chain A Residue 404 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8juq Crystal structure of Chitoporin from Vibrio harveyi in complex with gentamicin c1a
Resolution	2.21 Å
Binding residue (original residue number in PDB)	F278 S291 D293 D317
Binding residue (residue number reindexed from 1)	F278 S291 D293 D317
Annotation score	1

Gene Ontology

	Molecular Function
GO:0015288	porin activity
GO:0046872	metal ion binding

	Biological Process
GO:0006811	monoatomic ion transport

	Cellular Component
GO:0009279	cell outer membrane
GO:0016020	membrane
GO:0046930	pore complex

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Cellular Component

External links

PDB	RCSB:8juq, PDBe:8juq, PDBj:8juq
PDBsum	8juq
PubMed
UniProt	L0RVU0

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