Structure of PDB 8jpx Chain A Binding Site BS01

Receptor Information
>8jpx Chain A (length=770) Species: 186497 (Pyrococcus furiosus DSM 3638) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKAIVVINLVKINKKIIPDKIYVYRLFNDPEEELQKEGYSIYRLAYENVG
IVIDPENLIIATTKELEYEGEFIPEGEISFSELRNDYQSKLVLRLLKENG
IGEYELSKLLRKFRKPKTFGDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQ
SMKTLWELVNKDPKELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKK
PKLDHNQEIVKYWYNYHIERYWNTPEAKLEFYRKFGQVDLKQPAILAKFA
SKIKKNKNYKIYLLPQLVVPTYNAEQLESDVAKEILEYTKLMPEERKELL
ENILAEVDSDIIDKSLSEIEVEKIAQELENKIRVRDDKGNSVPISQLNVQ
KSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIILDSGLLADIQNFA
TNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDL
NSDKGIIEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRLFNLNV
ISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDYRFN
YDYIIGIDVAPMKRSEGYIGGSAVMFDSQGYIRKIVPIKIGEQRGESVDM
NEFFKEMVDKFKEFNIKLDNKKILLLRDGRITNNEEEGLKYISEMFDIEV
VTMDVIKNHPVRAFANMKMYFNLGGAIYLIPHKLKQAKGTPIPIKLAKKR
IIKNGKVEKQSITRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFANA
IRNEWKIKEEFLAEGFLYFV
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8jpx Molecular mechanism for target recognition, dimerization, and activation of Pyrococcus furiosus Argonautre
Resolution2.9 Å
Binding residue
(original residue number in PDB)		Y42 P55 E56 H147 M178 S251 K252 T289 K290 F488 K492 Q503 V504 V505 N506 K513 N529 Q533 R630 N633 H682 G689 T690 P691 I692 N727 G729 M735 R736
Binding residue
(residue number reindexed from 1)		Y42 P55 E56 H147 M178 S251 K252 T289 K290 F488 K492 Q503 V504 V505 N506 K513 N529 Q533 R630 N633 H682 G689 T690 P691 I692 N727 G729 M735 R736
Enzymatic activity
Enzyme Commision number 3.1.24.-
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0004519 endonuclease activity
GO:0004520 DNA endonuclease activity
GO:0030145 manganese ion binding
GO:0046872 metal ion binding
Biological Process
GO:0006259 DNA metabolic process
GO:0044355 clearance of foreign intracellular DNA

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Molecular Function
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Biological Process
External links
PDB RCSB:8jpx, PDBe:8jpx, PDBj:8jpx
PDBsum8jpx
PubMed38295801
UniProtQ8U3D2|AGO_PYRFU Protein argonaute (Gene Name=ago)

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