Structure of PDB 8jfr Chain A Binding Site BS01

Receptor Information

>8jfr Chain A (length=61) Species: 53344 (Staphylococcus delphini)

SMRKTIERLLNSELSSNSIAVRTGVSQAVISKLRNGKKELGNLTLNSAEK
LFEYQKEMEKV

Ligand information

>8jfr Chain G (length=19)

attatgacaaatgtcatag

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8jfr N-terminal domain of AcrIIA15 in complex with palindromic DNA substrate
• Resolution: 3.1 Å
• Binding residue (original residue number in PDB): S14 S15 N16 Q26 A27 S30 K31 N34
• Binding residue (residue number reindexed from 1): S15 S16 N17 Q27 A28 S31 K32 N35

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon Nov 18 15:29:38 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8jfr', asym_id = 'A', bs = 'BS01', title = 'N-terminal domain of AcrIIA15 in complex with palindromic DNA substrate'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8jfr', asym_id='A', bs='BS01', title='N-terminal domain of AcrIIA15 in complex with palindromic DNA substrate')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003677', uniprot = '', pdbid = '8jfr', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003677', uniprot='', pdbid='8jfr', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>