Structure of PDB 8j5h Chain A Binding Site BS01

Receptor Information
>8j5h Chain A (length=231) Species: 668825 (Streptomyces sp. ATCC 700974) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AVEQNLYDVGPRGPGHYIAISGNTAAGKTTLIETLAGSLRAAGADAVGVS
ERVFHHRYLKLMFSASADFAFPIQLSFMLERHLLLLDNLVRRGRTMVMER
SHLDDAMFVREHVASGAITAAQQRAYTEVSGELNARIPNPDLIVLMNPEP
ELSLERLARAEAEGSRPREFPSDAAKRAWVHRWYDLYQELHDDYRRRAVD
GDLRGTELLELDASPEEKIATVTARARSLVV
Ligand information
Ligand IDTV0
InChIInChI=1S/C9H13N3O5S/c10-4-1-2-12(8(16)11-4)7-5(14)6(15)9(17,3-13)18-7/h1-2,5-7,13-15,17H,3H2,(H2,10,11,16)/t5-,6+,7-,9+/m1/s1
InChIKeyNCKQSFKRXULRQX-AYHNYZOXSA-N
SMILES
SoftwareSMILES
CACTVS 3.385NC1=NC(=O)N(C=C1)[CH]2S[C](O)(CO)[CH](O)[CH]2O
CACTVS 3.385NC1=NC(=O)N(C=C1)[C@@H]2S[C@@](O)(CO)[C@@H](O)[C@H]2O
OpenEye OEToolkits 2.0.7C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@@](S2)(CO)O)O)O
OpenEye OEToolkits 2.0.7C1=CN(C(=O)N=C1N)C2C(C(C(S2)(CO)O)O)O
FormulaC9 H13 N3 O5 S
Name4-azanyl-1-[(2~{R},3~{R},4~{S},5~{S})-5-(hydroxymethyl)-3,4,5-tris(oxidanyl)thiolan-2-yl]pyrimidin-2-one
ChEMBL
DrugBank
ZINC
PDB chain8j5h Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8j5h Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine
Resolution1.4 Å
Binding residue
(original residue number in PDB)
E70 H74 Q93 F96 F127 W202
Binding residue
(residue number reindexed from 1)
E51 H55 Q74 F77 F108 W183
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016301 kinase activity
GO:0019136 deoxynucleoside kinase activity
Biological Process
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process
GO:0016310 phosphorylation
Cellular Component
GO:0005737 cytoplasm

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Cellular Component
External links
PDB RCSB:8j5h, PDBe:8j5h, PDBj:8j5h
PDBsum8j5h
PubMed
UniProtA0A370RDE4

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