Structure of PDB 8j5f Chain A Binding Site BS01

Receptor Information
>8j5f Chain A (length=238) Species: 668825 (Streptomyces sp. ATCC 700974) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EQNLYDVGPRDSGGREGPGHYIAISGNTAAGKTTLIETLAGSLRAAGADA
VGVSERVFHHRYLKLMFSASADFAFPIQLSFMLERHLLLLDNLVRRGRTM
VMERSHLDDAMFVREHVASGAITAAQQRAYTEVSGELNARIPNPDLIVLM
NPEPELSLERLARAEAEGSRPREFPSDAAKRAWVHRWYDLYQELHDDYRR
RAVDGDLRGTELLELDAAASPEEKIATVTARARSLVVG
Ligand information
Ligand IDCTN
InChIInChI=1S/C9H13N3O5/c10-5-1-2-12(9(16)11-5)8-7(15)6(14)4(3-13)17-8/h1-2,4,6-8,13-15H,3H2,(H2,10,11,16)/t4-,6-,7-,8-/m1/s1
InChIKeyUHDGCWIWMRVCDJ-XVFCMESISA-N
SMILES
SoftwareSMILES
CACTVS 3.341NC1=NC(=O)N(C=C1)[CH]2O[CH](CO)[CH](O)[CH]2O
OpenEye OEToolkits 1.5.0C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O
CACTVS 3.341NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O
ACDLabs 10.04O=C1N=C(N)C=CN1C2OC(C(O)C2O)CO
OpenEye OEToolkits 1.5.0C1=CN(C(=O)N=C1N)C2C(C(C(O2)CO)O)O
FormulaC9 H13 N3 O5
Name4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE;
CYTIDINE
ChEMBLCHEMBL95606
DrugBankDB02097
ZINCZINC000002583632
PDB chain8j5f Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8j5f Crystal structure of kinase AbmG in complex with cytidine and ADP
Resolution1.7 Å
Binding residue
(original residue number in PDB)
E70 H74 Q93 F96 R119 D124 F127 E188 W202
Binding residue
(residue number reindexed from 1)
E55 H59 Q78 F81 R104 D109 F112 E173 W187
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016301 kinase activity
GO:0019136 deoxynucleoside kinase activity
Biological Process
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process
GO:0016310 phosphorylation
Cellular Component
GO:0005737 cytoplasm

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Cellular Component
External links
PDB RCSB:8j5f, PDBe:8j5f, PDBj:8j5f
PDBsum8j5f
PubMed
UniProtA0A370RDE4

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