Structure of PDB 8j5e Chain A Binding Site BS01

Receptor Information
>8j5e Chain A (length=235) Species: 668825 (Streptomyces sp. ATCC 700974) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EQNLYDVGPRDSEGPGHYIAISGNTAAGKTTLIETLAGSLRAAGADAVGV
SERVFHHRYLKLMFSASADFAFPIQLSFMLERHLLLLDNLVRRGRTMVME
RSHLDDAMFVREHVASGAITAAQQRAYTEVSGELNARIPNPDLIVLMNPE
PELSLERLARAEAEGSRPREFPSDAAKRAWVHRWYDLYQELHDDYRRRAV
DGDLRGTELLELDAAASPEEKIATVTARARSLVVG
Ligand information
Ligand IDTQR
InChIInChI=1S/C9H13N3O4S/c10-5-1-2-12(9(16)11-5)8-7(15)6(14)4(3-13)17-8/h1-2,4,6-8,13-15H,3H2,(H2,10,11,16)/t4-,6-,7-,8-/m1/s1
InChIKeyGAKJJSAXUFZQTL-XVFCMESISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](S2)CO)O)O
OpenEye OEToolkits 2.0.7C1=CN(C(=O)N=C1N)C2C(C(C(S2)CO)O)O
CACTVS 3.385NC1=NC(=O)N(C=C1)[CH]2S[CH](CO)[CH](O)[CH]2O
CACTVS 3.385NC1=NC(=O)N(C=C1)[C@@H]2S[C@H](CO)[C@@H](O)[C@H]2O
FormulaC9 H13 N3 O4 S
Name4-azanyl-1-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)thiolan-2-yl]pyrimidin-2-one
ChEMBL
DrugBank
ZINC
PDB chain8j5e Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8j5e Crystal structure of kinase AbmG in complex with 4'-thiocytidine
Resolution1.7 Å
Binding residue
(original residue number in PDB)
E70 R71 Q93 F96 F127 W202
Binding residue
(residue number reindexed from 1)
E52 R53 Q75 F78 F109 W184
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016301 kinase activity
GO:0019136 deoxynucleoside kinase activity
Biological Process
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process
GO:0016310 phosphorylation
Cellular Component
GO:0005737 cytoplasm

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Cellular Component
External links
PDB RCSB:8j5e, PDBe:8j5e, PDBj:8j5e
PDBsum8j5e
PubMed
UniProtA0A370RDE4

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