Structure of PDB 8j4h Chain A Binding Site BS01
Receptor Information
>8j4h Chain A (length=309) Species:
28172
(Vibrio metschnikovii) [
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QDITLYSGRGETLVKPIIEQFEKQSGIKVNVRYGDTAQLAVLLQEEGARS
PADVYWGQDAGAMGALANAGLLATLPEAVYKQLPEIYTSKTGQWVAASGR
SRVIAYSTERASAEDIPASVFDLTSEKYQGRFGLAPTNGGFQSFVTAMRV
QHGDEKTLAWLKAMKANQPKIYRNNTTQIQAIGDGEIDFALVNNYYLPRF
VAANASFPAKQTYFAEGDIGNLVNVAGVAVLKSSKKQPQAIQFIEYMLSP
AAQQYFTSVVGEYPVTQGIIPNPVLGELDTLLQAAPSIDLDQLADLQGTL
KLLRDAGLL
Ligand information
Ligand ID
TO9
InChI
InChI=1S/C9H10O5/c10-6-2-1-5(3-7(6)11)4-8(12)9(13)14/h1-3,8,10-12H,4H2,(H,13,14)/t8-/m1/s1
InChIKey
PAFLSMZLRSPALU-MRVPVSSYSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 2.0.7
c1cc(c(cc1CC(C(=O)O)O)O)O
CACTVS 3.385
O[CH](Cc1ccc(O)c(O)c1)C(O)=O
OpenEye OEToolkits 2.0.7
c1cc(c(cc1C[C@H](C(=O)O)O)O)O
CACTVS 3.385
O[C@H](Cc1ccc(O)c(O)c1)C(O)=O
Formula
C9 H10 O5
Name
(2~{R})-3-[3,4-bis(oxidanyl)phenyl]-2-oxidanyl-propanoic acid;
Danshensu
ChEMBL
CHEMBL4218391
DrugBank
ZINC
ZINC000000895535
PDB chain
8j4h Chain A Residue 401 [
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Receptor-Ligand Complex Structure
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PDB
8j4h
Molecular Mechanism of Fe 3+ Binding Inhibition to Vibrio metschnikovii Ferric Ion-Binding Protein, FbpA, by Rosmarinic Acid and its Hydrolysate, Danshensu.
Resolution
2.01 Å
Binding residue
(original residue number in PDB)
Q58 R100 N138 N193 Y195 Y196
Binding residue
(residue number reindexed from 1)
Q58 R100 N138 N193 Y195 Y196
Annotation score
1
External links
PDB
RCSB:8j4h
,
PDBe:8j4h
,
PDBj:8j4h
PDBsum
8j4h
PubMed
38143427
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